Gene
| Gene Model ID | pfu_aug2.0_78.1_26811 |
|---|---|
| Locus | scaffold78.1 : 362163 ... 378471 : - |
| To GenomeBrowser | scaffold78.1:362163..378471 |
| Genes list of scaffold | scaffold78.1 |
| Synonym | pfu_aug1.0_1605.1_15546 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_78.1_26811.t1 | 1 | 1 | PAX | 34 | 158 | 0.0 | 245.2 | 0.0 | 0.0 | 244.6 |
| pfu_aug2.0_78.1_26811.t1 | 2 | 1 | HTH_23 | 55 | 94 | 6.5e-08 | 31.9 | 1.9e-09 | 2.8e-06 | 26.8 |
| pfu_aug2.0_78.1_26811.t1 | 2 | 1 | HTH_29 | 56 | 158 | 2.0e-06 | 27.9 | 5.7e-09 | 8.4e-06 | 25.9 |
| pfu_aug2.0_78.1_26811.t1 | 2 | 1 | HTH_32 | 83 | 157 | 9.3e-06 | 26.3 | 3.1e-06 | 0.0046 | 17.7 |
| pfu_aug2.0_78.1_26811.t1 | 2 | 2 | HTH_29 | 220 | 261 | 2.0e-06 | 27.9 | 0.11 | 160.0 | 2.4 |
| pfu_aug2.0_78.1_26811.t1 | 2 | 2 | HTH_32 | 220 | 261 | 9.3e-06 | 26.3 | 0.004 | 5.9 | 7.7 |
| pfu_aug2.0_78.1_26811.t1 | 1 | 1 | Homeobox | 224 | 280 | 1.3e-23 | 82.3 | 1.9e-26 | 2.8e-23 | 81.2 |
| pfu_aug2.0_78.1_26811.t1 | 2 | 2 | HTH_23 | 251 | 279 | 6.5e-08 | 31.9 | 0.065 | 97.0 | 2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_78.1_26811.t1 | gi|524905746|ref|XP_005108236.1| | PREDICTED: paired box protein Pax-3-B-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_78.1_26811.t1 | gi|543370165|ref|XP_005528308.1| | PREDICTED: paired box protein Pax-7 isoform X4 [Pseudopodoces humilis] | 0.0 |
| pfu_aug2.0_78.1_26811.t1 | gi|543370163|ref|XP_005528307.1| | PREDICTED: paired box protein Pax-7 isoform X3 [Pseudopodoces humilis] | 0.0 |
| pfu_aug2.0_78.1_26811.t1 | gi|568930757|ref|XP_006538694.1| | PREDICTED: paired box protein Pax-7 isoform X3 [Mus musculus] | 0.0 |
| pfu_aug2.0_78.1_26811.t1 | gi|543370159|ref|XP_005528305.1| | PREDICTED: paired box protein Pax-7 isoform X1 [Pseudopodoces humilis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_78.1_26811.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_78.1_26811.t1 atgcagaccccaaagaagtttgacaattttctttatcttaattcggatgatttccaatattcggagtatccaagaatgga aacggaggcactaatgaaaggtcaaggacgtgtaaatcaacttggtggcgtcttcataaacggcagacccctaccaaatc atatccggctcaagatagtagagttagctgctcaaggcgtgcgtccatgcgtcattagtcgccaactacgcgtctcgcat ggctgtgtcagcaaaatactacagagatatcaagaaacaggaagtatacgtccaggcgtcatcggcggaagtaagccacg agttgcgacaccggaagtagaaaggaagatagaacaatacaaaaaggaaaatcctggaattttcagctgggaaatccggg atcgtttactaaaggaaggaatttgtgacagaagtactgttccaagtgtgagttctattagcagagttttaaggagtcgg ttccaaaaatgtgactcggacgaaaacgatccagacgacgagggagttgacgacgataatagcaatggcgccacggataa atccggaacctactcaatcaatggtctccttgcagacgacaaaagcgacaaaagtgacaatgaatccgactgtgagtcag aacctggtctatcggtgaaaagaaaacagaggagaagtcggactactttcaccgcggagcaattagaagaactagagcga gcctttgaacgtacccattacccggatatatatacgcgagaggaattagcacagagaacaaagctcactgaggctcgggt gcaggtgtggttcagtaatagacgagcaagatggcggaaacagatgggaagcaatcagctcacggctctgaacagcattc tacaggttccccaaggtatgggagcgccaccttatatgatccatgacccaagctatacgctgcctcataacacagacaac atttggcacagatcgtccatggcccagtcgtttccgtcattcggtcagtcactgaaaccctctgacaattcatacgccgg tattatggagaattacctgtctcatacatcacagattcacggtcttccttcccatacgtcatctgagtccttatcctcta cctggtccacgccgtccaccacttccgttcctgcgctgggatatgcgccatctagtggtcattaccatcattattctgac gtagccaaatcatccctacattcttataatcctcatataccatcagttgcagtcgccaacatggaccgatgctccgtcga tgacagcctggttgcattacgtatgaagtcacgtgaacattcagccgctctaagcctcatgcaggttgccgacacaaaca aaatggcggcaacctcgttttga |
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Protein
| Protein ID | pfu_aug2.0_78.1_26811.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_78.1_26811.t1 MQTPKKFDNFLYLNSDDFQYSEYPRMETEALMKGQGRVNQLGGVFINGRPLPNHIRLKIVELAAQGVRPCVISRQLRVSH GCVSKILQRYQETGSIRPGVIGGSKPRVATPEVERKIEQYKKENPGIFSWEIRDRLLKEGICDRSTVPSVSSISRVLRSR FQKCDSDENDPDDEGVDDDNSNGATDKSGTYSINGLLADDKSDKSDNESDCESEPGLSVKRKQRRSRTTFTAEQLEELER AFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQMGSNQLTALNSILQVPQGMGAPPYMIHDPSYTLPHNTDN IWHRSSMAQSFPSFGQSLKPSDNSYAGIMENYLSHTSQIHGLPSHTSSESLSSTWSTPSTTSVPALGYAPSSGHYHHYSD VAKSSLHSYNPHIPSVAVANMDRCSVDDSLVALRMKSREHSAALSLMQVADTNKMAATSF |
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