Gene
| Gene Model ID | pfu_aug2.0_78.1_26814 |
|---|---|
| Locus | scaffold78.1 : 459898 ... 534432 : - |
| To GenomeBrowser | scaffold78.1:459898..534432 |
| Genes list of scaffold | scaffold78.1 |
| Synonym | pfu_aug1.0_9425.1_46036 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_78.1_26814.t1 | 2 | 1 | Homeobox | 23 | 68 | 6.1e-32 | 109.0 | 1.5e-14 | 7.6e-11 | 41.4 |
| pfu_aug2.0_78.1_26814.t1 | 2 | 2 | Homeobox | 105 | 161 | 6.1e-32 | 109.0 | 6.4e-24 | 3.2e-20 | 71.5 |
| pfu_aug2.0_78.1_26814.t1 | 1 | 1 | C1q | 422 | 545 | 2.2e-22 | 79.4 | 8.8e-26 | 4.4e-22 | 78.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_78.1_26814.t1 | gi|432881704|ref|XP_004073910.1| | PREDICTED: homeobox even-skipped homolog protein 1 [Oryzias latipes] | 3.00004e-41 |
| pfu_aug2.0_78.1_26814.t1 | gi|507537633|ref|XP_004652840.1| | PREDICTED: homeobox even-skipped homolog protein 1 isoform X1 [Jaculus jaculus] | 4.00001e-41 |
| pfu_aug2.0_78.1_26814.t1 | gi|742193612|ref|XP_010891328.1| | PREDICTED: homeobox even-skipped homolog protein 1 [Esox lucius] | 4.99997e-41 |
| pfu_aug2.0_78.1_26814.t1 | gi|573896777|ref|XP_006636127.1| | PREDICTED: homeobox protein XHOX-3-like [Lepisosteus oculatus] | 5.99994e-41 |
Transcript
| Transcript ID | pfu_aug2.0_78.1_26814.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_78.1_26814.t1 atgaatcgtatcatttcagattcagatttcagagatctgtcacgtgactatgacgacaacagcgtccgtagatacagaac agctttcacccgtgaacagataggaaggctagaaaaagaattttacaaagagaattatgtatccagaccaaggagatgtg aactagcgaaactcctcaacttgcctgaaaacactatcaaggtaaaagaaatattcatgtttgttgtgggtattaattta aaggatgaattgaaaatcgaattaacagcgtacaaaaaaaatctgtcacgtgactatgacgacaacagcgtccgtagata cagaacagctttcacccgtgaacagataggaaggctagaaaaagaattttacaaagagaattatgtatccagaccaagga gatgtgaactagcgaaactcctcaacttgcctgaaaacactatcaaggtatggtttcagaataggcgaatgaaagacaag agacaaagaatggccatggcttggccttacggtatagcagacccccatctatatgcttatttggccgctgcggccgcctc atatccctatgggatctcaccatctaacactaatccattcaactactactcctcactgggacttcagagaaattcctcta gtctaagtcaattctctctggcaagtccactacgtactagatctgaaataattccaggaatgacgggatcagcattatta cgaaatgcggccatgccagctccgcacacaatggcgggaacatcaacaattggttgtaatctacattcacctcttgaagg ttcatcccctttgctcagtcatgcaaatatgtcgtgctcaaataatacagaagaaaactgtaacattggttcccttatgg gaggactttctaacttacccacgtcacttcctggagcaactgcgcaggcaccaaaagctcactctaatacaacatcacag ggtatgcagtataagtatggtaaatctaaatctaaattgttggtgtcgaagccaaaggaagcaagagcttatttgtggtt atctattatttcagaggcagaaaggtttattggggtgtcagagacatttcaccaccttcatacaaagaagaacacgcttc acgtcatggatgggtacatggtcgcagacgtctccggtaaggatgagaaagccagaacgaggctgttggcgcaggaggaa acgctggcctacattcagggagaaatacaagcattgaaagactgtgtttccaagcgcggcgtcgcctttactgcgcaaat ggatgcgcataagccaattttaggcgataaacaaataatcgactttgacaaaattacaacaaacgtcggaaatgcctttg ataatgcaacttccatgtttactgcaccgatgaatggggtatacgtattcgaggtcgtggtcggcacgaacggtcaaagc actacggacctggaaatagtcaaaaatggcgctcatctcaaacgagtttatgggtccagctaccatggttgggccacttc cacggggtccgtgacgacacgccttatttccggtgacaaggtttacgtcagacagtacacgtacaatcatgggttagtag gtcacgagctgacctcgtttagtggcttcatggtgcagcctgaatagacacatgctgaaaacagcaaggagactctggac atggagactagaccaccttcaagagatccgggatgttctaaaagaaatgaagaatgatcttacacgagatatggaagaag aaaaaacaccatatggaacatatggctgatcatcaatcttccaaagaaagatgacttcactcagtatggtactggagaag gaatgaagtccatgagtcaagctgttttgtag |
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Protein
| Protein ID | pfu_aug2.0_78.1_26814.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_78.1_26814.t1 MNRIISDSDFRDLSRDYDDNSVRRYRTAFTREQIGRLEKEFYKENYVSRPRRCELAKLLNLPENTIKVKEIFMFVVGINL KDELKIELTAYKKNLSRDYDDNSVRRYRTAFTREQIGRLEKEFYKENYVSRPRRCELAKLLNLPENTIKVWFQNRRMKDK RQRMAMAWPYGIADPHLYAYLAAAAASYPYGISPSNTNPFNYYSSLGLQRNSSSLSQFSLASPLRTRSEIIPGMTGSALL RNAAMPAPHTMAGTSTIGCNLHSPLEGSSPLLSHANMSCSNNTEENCNIGSLMGGLSNLPTSLPGATAQAPKAHSNTTSQ GMQYKYGKSKSKLLVSKPKEARAYLWLSIISEAERFIGVSETFHHLHTKKNTLHVMDGYMVADVSGKDEKARTRLLAQEE TLAYIQGEIQALKDCVSKRGVAFTAQMDAHKPILGDKQIIDFDKITTNVGNAFDNATSMFTAPMNGVYVFEVVVGTNGQS TTDLEIVKNGAHLKRVYGSSYHGWATSTGSVTTRLISGDKVYVRQYTYNHGLVGHELTSFSGFMVQPEXTHAENSKETLD METRPPSRDPGCSKRNEEXSYTRYGRRKNTIWNIWLIINLPKKDDFTQYGTGEGMKSMSQAVL |
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