Gene
| Gene Model ID | pfu_aug2.0_782.1_07877 |
|---|---|
| Locus | scaffold782.1 : 70326 ... 85816 : + |
| To GenomeBrowser | scaffold782.1:70326..85816 |
| Genes list of scaffold | scaffold782.1 |
| Synonym | pfu_aug1.0_4882.1_23677 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_782.1_07877.t1 | 2 | 1 | CUB | 35 | 83 | 1.4e-08 | 34.7 | 3.0e-07 | 0.00064 | 19.7 |
| pfu_aug2.0_782.1_07877.t1 | 2 | 2 | CUB | 175 | 210 | 1.4e-08 | 34.7 | 5.2e-05 | 0.11 | 12.5 |
| pfu_aug2.0_782.1_07877.t1 | 1 | 1 | Ldl_recept_a | 220 | 254 | 8.5e-09 | 35.1 | 9.3e-12 | 2.0e-08 | 34.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_782.1_07877.t1 | gi|260796503|ref|XP_002593244.1| | hypothetical protein BRAFLDRAFT_124864 [Branchiostoma floridae] | 2.0e-12 |
| pfu_aug2.0_782.1_07877.t1 | gi|676470709|ref|XP_009058938.1| | hypothetical protein LOTGIDRAFT_233803 [Lottia gigantea] | 1.0e-10 |
| pfu_aug2.0_782.1_07877.t1 | gi|115920166|ref|XP_783716.2| | 5.0e-10 | |
| pfu_aug2.0_782.1_07877.t1 | gi|390332942|ref|XP_003723600.1| | 5.0e-10 | |
| pfu_aug2.0_782.1_07877.t1 | gi|260821475|ref|XP_002606058.1| | hypothetical protein BRAFLDRAFT_92077 [Branchiostoma floridae] | 3.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_782.1_07877.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_782.1_07877.t1 atgcaggatacaactggtgggagctgtaatgaaaacataaatgttgaaaacaatctgttcctgagatcccacataggaag ttttcaactgggaaacctcatcaagtacggtgataatcaagattgtacactgacgttggacgctggaacgggaaaacgaa tactgctgcagtttgtcaaatttgacatgcagcccaaggtaagcggacagtgtgtagactatattgagatcaacgacagt aatgctgagctatccttaacctcatcacaagcacctgtcattacaacagaggcaatgacgacagaagcaatgaccacatc gggatccgccacagacatttcaacaggtacctcagcaacacaggacagcacaacacaggcaagcacaacacagataagca cagcacagataagcagcacagacggaacgacttctgattctaccggatccaatgcaactgatggtaccgacggtaccaca caagatacacctgtgacgtcaggatcgtctgctggcgttggacatcacattctctgtggggattcagcatctccttacga gtctggtggaaggaacctgactttgaggtttgtgacagacggatcagtcactgcaagcggatttaagatactagtcatgt cattcaaggaaagtggaacttgttcatctgaagaattcaaatgtgatactaataggtgcatctcaaacacattgaagtgt gatactgtctatcattgcttagataagtcagatgaaaataaaaatacggctggttgcacattattggacgatattatagg tacactgacaggtctaggttcaaacgtcctgattgccattatagtgatagcaggcattgtagttttagtacctgtgtcct caatcataatataccaatgctgctgtaagaaggcagacctacctacagactcggagaccgtatcagaaacaagaccaaag aaactacccaaaaatgttgtcgatgtggaacccgtagatacaaagaaaaaaggcaaggcatcaaagtctacggataaaga tgattggtag |
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Protein
| Protein ID | pfu_aug2.0_782.1_07877.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_782.1_07877.t1 MQDTTGGSCNENINVENNLFLRSHIGSFQLGNLIKYGDNQDCTLTLDAGTGKRILLQFVKFDMQPKVSGQCVDYIEINDS NAELSLTSSQAPVITTEAMTTEAMTTSGSATDISTGTSATQDSTTQASTTQISTAQISSTDGTTSDSTGSNATDGTDGTT QDTPVTSGSSAGVGHHILCGDSASPYESGGRNLTLRFVTDGSVTASGFKILVMSFKESGTCSSEEFKCDTNRCISNTLKC DTVYHCLDKSDENKNTAGCTLLDDIIGTLTGLGSNVLIAIIVIAGIVVLVPVSSIIIYQCCCKKADLPTDSETVSETRPK KLPKNVVDVEPVDTKKKGKASKSTDKDDW |
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