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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_784.1_14554
Locus scaffold784.1 : 98927 ... 110275 : -
To GenomeBrowser scaffold784.1:98927..110275
Genes list of scaffold scaffold784.1
Synonym pfu_aug1.0_18429.1_32913

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_784.1_14554.t1 7 1 Cadherin 28 45 0.0 237.6 1.8 9000.0 -3.0
pfu_aug2.0_784.1_14554.t1 7 2 Cadherin 76 97 0.0 237.6 0.0055 27.0 5.0
pfu_aug2.0_784.1_14554.t1 7 3 Cadherin 111 203 0.0 237.6 1.5e-17 7.5e-14 51.7
pfu_aug2.0_784.1_14554.t1 7 4 Cadherin 224 311 0.0 237.6 1.0e-13 5.2e-10 39.4
pfu_aug2.0_784.1_14554.t1 7 5 Cadherin 328 414 0.0 237.6 2.0e-19 9.7e-16 57.8
pfu_aug2.0_784.1_14554.t1 7 6 Cadherin 430 520 0.0 237.6 9.4e-21 4.7e-17 62.0
pfu_aug2.0_784.1_14554.t1 7 7 Cadherin 545 596 0.0 237.6 9.0e-09 4.4e-05 23.6

Transcript
Transcript IDpfu_aug2.0_784.1_14554.t1
Definition-
>pfu_aug2.0_784.1_14554.t1
atggaggctgtgtactatgtggtgctagtctgtggagttattatgacaatcggaataagtgctcaagatgattatgtacg
ttttactgctgatgaagaggagcctaaagggacatatatagggaacatagcgacgaaagccaacatttccggacagaatc
tatcctcggacgatgctgctactttggagtacaggctcctggttcagnctgaaagagaaaaaatggttatcgcgaaagat
ggcgggaatccaccgaagtctggttccctgtctgtcacactgaacgtccttgacattaatgataatcctccagttttcga
aaaaccaatttataacatcacagtaaacgaagacattggagtaaacaaaaccatcaccattctaaatgcaacggacaaag
accaaggagaaaatggtagagttgtatacagaatgagcccacgacaggattccaagatattttctctgttcgcggtcaca
gaatctggcgaggtcaaggtcattagttcgcttgtatcagaacctggggaactctacagaatgtatgtgattgccagtga
caacgctaaacaacctctcatggctcaagccgaggttcatgtcaatgtcaaggacactcataataacagaccaagtatca
aagtggatttattatcgaatacagacaaagcggaagtggtggaaaatggcgctgaaaatacagcagttgcgcatgtcact
gtaacggatccggatactggactgaatggctttgtgaattgttcagttgtaagtgatgaattcaagttgcaacgatttga
tgtgcacgaatacaaagtcgtcgccaaacgatcatttgacagagagatgaagcaagaatatgaagtaactgtcggttgca
aagacgcaggaaccccgcctctcaatagctcattttcgttcatagtgagagttatggatgaaaacgacaacgcgccttac
ttcagtaaaaattccgtacgagtcgaggtcaaggaaaacaacgacattggcgcgggactagttcgtgtctcggccaatga
ttttgatgctggcaagaacgcagagattacatacgaattacagccatcggtatatgacttccggatagatcctaaatccg
gaatgatcagtgcttacttccgtttggatagagaaacaacgagtatgattcagttaaaagtgttcgctgtagatggtgga
acacaaccgaaaactggaacggttgatgttgtcatagaaatcaaagacattaatgataacaaaccggaattccaaaatca
gagttttgagttcgccatttcagaacactctggtaaggatgccacggtaggacttctgattgccactgacaaggatttgg
gtgataacaagaaaattatcttctcgttactgacacaagatgttcccggaacaccttttgacgtccttcctaatggcact
atcatagcaacagatgaccttgaccgtgagacaatagacaagtatcagttcactgttgtcgcctctgactctggtgaccc
cgtgcaacaatcctccgccaaggtcaccgtcactgttttggacatcaatgaccaaagtccttatttcgtgtttcctagtg
acatcaatagcaccatagttatttcgtaccaaacattacctaatacggtcatagccaagcttgatacacacgacggggat
gaaggactgaatgctaaagtcacttattttgctacagacaaaaagtattctgacatgtttcaaataaatagcatttcagg
tcgaattgtcctcatcaaagcacttacaactgacgatattgtgattattttgaccatatgtttgataaaaagagctgata
gacaaaagatgaaatacctacagtcccagcaagacgaagaaggtcgcaacggaggaaactctatcgaaaccaccaagaaa
atacaaacaaagggtctgacagcaaatctaggcacagacgaacgaatccgtcaccagctcagttccctacaaatccagca
agcatacgaaaaacagagatctggacaaagtccatttccctcttcctctgtaagatacgagggtgatgataacagtgaaa
attcgggagaactcacgaccagcgatagtgggcgtggcggaagtgacgaagatctgcataatagtacagtcttatcctgc
tcaatggattttgatggtgagattactttttcgaatagtaaatag

Protein
Protein IDpfu_aug2.0_784.1_14554.t1
Definition-
>pfu_aug2.0_784.1_14554.t1
MEAVYYVVLVCGVIMTIGISAQDDYVRFTADEEEPKGTYIGNIATKANISGQNLSSDDAATLEYRLLVQXEREKMVIAKD
GGNPPKSGSLSVTLNVLDINDNPPVFEKPIYNITVNEDIGVNKTITILNATDKDQGENGRVVYRMSPRQDSKIFSLFAVT
ESGEVKVISSLVSEPGELYRMYVIASDNAKQPLMAQAEVHVNVKDTHNNRPSIKVDLLSNTDKAEVVENGAENTAVAHVT
VTDPDTGLNGFVNCSVVSDEFKLQRFDVHEYKVVAKRSFDREMKQEYEVTVGCKDAGTPPLNSSFSFIVRVMDENDNAPY
FSKNSVRVEVKENNDIGAGLVRVSANDFDAGKNAEITYELQPSVYDFRIDPKSGMISAYFRLDRETTSMIQLKVFAVDGG
TQPKTGTVDVVIEIKDINDNKPEFQNQSFEFAISEHSGKDATVGLLIATDKDLGDNKKIIFSLLTQDVPGTPFDVLPNGT
IIATDDLDRETIDKYQFTVVASDSGDPVQQSSAKVTVTVLDINDQSPYFVFPSDINSTIVISYQTLPNTVIAKLDTHDGD
EGLNAKVTYFATDKKYSDMFQINSISGRIVLIKALTTDDIVIILTICLIKRADRQKMKYLQSQQDEEGRNGGNSIETTKK
IQTKGLTANLGTDERIRHQLSSLQIQQAYEKQRSGQSPFPSSSVRYEGDDNSENSGELTTSDSGRGGSDEDLHNSTVLSC
SMDFDGEITFSNSK

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