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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_784.1_14557
Locus scaffold784.1 : 178874 ... 191421 : -
To GenomeBrowser scaffold784.1:178874..191421
Genes list of scaffold scaffold784.1
Synonym pfu_aug1.0_10271.1_68167

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_784.1_14557.t1 5 1 Cadherin_2 24 109 1.9e-17 62.5 9.0e-17 3.3e-13 48.9
pfu_aug2.0_784.1_14557.t1 7 1 Cadherin 27 96 0.0 298.5 4.1e-09 1.5e-05 25.1
pfu_aug2.0_784.1_14557.t1 7 2 Cadherin 141 232 0.0 298.5 3.8e-14 1.4e-10 41.2
pfu_aug2.0_784.1_14557.t1 5 2 Cadherin_2 172 204 1.9e-17 62.5 0.17 640.0 0.0
pfu_aug2.0_784.1_14557.t1 7 3 Cadherin 247 341 0.0 298.5 6.2e-19 2.3e-15 56.5
pfu_aug2.0_784.1_14557.t1 7 4 Cadherin 361 450 0.0 298.5 1.5e-12 5.5e-09 36.1
pfu_aug2.0_784.1_14557.t1 5 3 Cadherin_2 405 423 1.9e-17 62.5 0.083 310.0 1.0
pfu_aug2.0_784.1_14557.t1 7 5 Cadherin 466 554 0.0 298.5 4.3e-22 1.6e-18 66.7
pfu_aug2.0_784.1_14557.t1 5 4 Cadherin_2 501 527 1.9e-17 62.5 0.06 220.0 1.4
pfu_aug2.0_784.1_14557.t1 5 5 Cadherin_2 569 627 1.9e-17 62.5 0.035 130.0 2.2
pfu_aug2.0_784.1_14557.t1 7 6 Cadherin 571 658 0.0 298.5 5.2e-13 1.9e-09 37.6
pfu_aug2.0_784.1_14557.t1 7 7 Cadherin 685 765 0.0 298.5 1.4e-14 5.0e-11 42.6

Transcript
Transcript IDpfu_aug2.0_784.1_14557.t1
Definition-
>pfu_aug2.0_784.1_14557.t1
atgtctagtcaaacagcggtgctagtgttgtccagtttgttactgctggtcactaggtcacattctcaggatctccaata
cacaatcaaggaagaaagatcgtccggtagtaaaataggaaacatcgtcaacgattcaacggtgctagatagaacaatct
cgggagtggaatacagaattctgactcaggggaatgaattcgcaaaatattttcgaatcgacaacagaactggagattta
tttacatcagaagttctagacagagagagtttaacagattgtgaattttcagatgtttgtacgattccgctcgaaattat
agcacaagcaccgggtggacgttactttaagaaggtgggaatccagtttataatagaggatatcaatgataatgcaccta
aattcacttccaatcagacaactgtagaaatatcagagtcgtctgctactggggaatccttatcactagagggcgctgta
gacttagatatcggtatcaattctgtgctgacttatagaatcgttccttccgaaaatgttccttttgtagtcgtggatga
taaaagtccaattattaaacttcagctggtccaaaaaatcgacagagaaacaacagacaagtatcagtttcaaattctag
ctatagacggcggaagtgtgccattaactggagctctggaagtcactgttctaataacagataataatgacaacaaacca
aagtttttacagcctgtgttcaatatatcaatagacgaggatttggcggtaaattctgtcattctgaatatcagtgcaac
tgacccggacgaaggcgtgaatggtgaagtttcgtatcgtctcagttcacaccaatcagaggaaattcgaaacatgtttg
ccatcgactctgcacttggaaacttgacaataatcaaacctcttacatatcaaccaggagaaacattaaaaatcatcatc
gaagcgtcggataacgctattcaaccactgatatctcaagccatcgtgtacgtcaaagttctcgattccacgaatgacgt
accggaaatacacgtaaacttgctatcgagttcaagccgcgcaagcatagctgaaaacgcaacaatcggcgcagctgtcg
ctcacgtaaaagtaacggatgacgatttgggaacaaacggttatgttaattgttctgtgacacggggacacgagttcttt
ggtcttgaaaaactggatgtgaacgaatacaaagttgtggtatctgcaaaacttgatcgcgagaagaaagcatttcatga
cgtcactgtcacgtgtcaggactttggagtcccttcattgaacgcgtcagaaaattttgaagtcgaaattttggatataa
atgaagaaccgccaaaattcgtgaaaagcatatttgaagttagtataacagaaaacaacaatatcggagcgttacttaca
actgtgtctgctatagacacggatagtggaatgaatgccagaatacgatattcattactgcagacgggaaaatataattt
tgtcattgattccgttacaggggaaattcgagtaaattttgtactagacagggagacggtacccgaaataacgtttaaag
ttgcggcatctgacagtggtgtacaacctaagacaggtctggccactgtcatagttattatactggacgataacgataac
gatccaagttttgaaaatcagccaattacactctccgtcctggaaaaccaaccaatcgacacatttgttggaaaagttaa
ggcaaccgacattgatgctagagaaaatggcactgttaaatacaaaatgaaggaccagttgtctacattttggatttcgg
acaatgggtcgatatttacgaaagacattatagatcgtgagttatatccacatggaatcacattgagtgtaatagcatac
gatcaaggtcaaatcattagtagaaatgcgtctgcacttgtaactgtacttgtaacggacatcaacgacaacgctccgat
tcttgtgtttccaaacgaagttaaccgaacaatcacgatgatttacgatcttccagaagggaccatcatagggcgtgtgg
aggctgaggataaagactatagtatcaacgctaaactcacatactcatttagtgaaaaaagcgcgcacttgctctttcgt
atagatggcgacaccggtgaaataaaaaccgccagatcttttactacccaagacatcaatcgatatgtatttaccattac
agtggaagatcaaggtgttccgaaatattctgtcaaccatacattgatcgtagcaattatttcaaacatctatgaaccta
taccgagatttaaggaggaaggaggggacagttatcttctcattgctgtcgtcatatcctgtgttaccgttgttttggcg
ggagttatcattttggttatattcttactcagaagaattgatcagaagaaacgcgagcacgaaaatgccacccaccaaga
acaacttgcaaatagtcagaaatctggactgtacgacgcattggatgtaagccgagacctaccgaagaccaaaagtgaaa
aacgagtcagtttctcggattccctggaaagtacggacactcctatagaaaggccatccttcaagatgactcctagtaaa
gaaaaaatagaacagttactggatcagatatcgacccctcccacagcccgggagtctcaggttcgctcccttggattacg
gtcccccggtcgccagaaccccaggtcacaattggagaaaatgaaattacagaaggagcttctccagttacataactcaa
ggatggcatcgatggtgagaatgcaggatgataacgaaagtgaaacctccatagaatccaacacatcagacagtgggcgt
ggcggaagtgaaagtgacatccacagcactctgggtcagatccacgtaccggaaatagtgactatgggtgcaaatttaag
accttatcattactttaattttaaaaatagtctggacaatttccagagacattctatttctgatgtcgttagtgaaagtg
tcgccacttatgacgaatacgacaacgcatcgacgacaacttccggtagctatacagtggacgatcttgatgctgacttc
cggtctgacgtcatagtgtag

Protein
Protein IDpfu_aug2.0_784.1_14557.t1
Definition-
>pfu_aug2.0_784.1_14557.t1
MSSQTAVLVLSSLLLLVTRSHSQDLQYTIKEERSSGSKIGNIVNDSTVLDRTISGVEYRILTQGNEFAKYFRIDNRTGDL
FTSEVLDRESLTDCEFSDVCTIPLEIIAQAPGGRYFKKVGIQFIIEDINDNAPKFTSNQTTVEISESSATGESLSLEGAV
DLDIGINSVLTYRIVPSENVPFVVVDDKSPIIKLQLVQKIDRETTDKYQFQILAIDGGSVPLTGALEVTVLITDNNDNKP
KFLQPVFNISIDEDLAVNSVILNISATDPDEGVNGEVSYRLSSHQSEEIRNMFAIDSALGNLTIIKPLTYQPGETLKIII
EASDNAIQPLISQAIVYVKVLDSTNDVPEIHVNLLSSSSRASIAENATIGAAVAHVKVTDDDLGTNGYVNCSVTRGHEFF
GLEKLDVNEYKVVVSAKLDREKKAFHDVTVTCQDFGVPSLNASENFEVEILDINEEPPKFVKSIFEVSITENNNIGALLT
TVSAIDTDSGMNARIRYSLLQTGKYNFVIDSVTGEIRVNFVLDRETVPEITFKVAASDSGVQPKTGLATVIVIILDDNDN
DPSFENQPITLSVLENQPIDTFVGKVKATDIDARENGTVKYKMKDQLSTFWISDNGSIFTKDIIDRELYPHGITLSVIAY
DQGQIISRNASALVTVLVTDINDNAPILVFPNEVNRTITMIYDLPEGTIIGRVEAEDKDYSINAKLTYSFSEKSAHLLFR
IDGDTGEIKTARSFTTQDINRYVFTITVEDQGVPKYSVNHTLIVAIISNIYEPIPRFKEEGGDSYLLIAVVISCVTVVLA
GVIILVIFLLRRIDQKKREHENATHQEQLANSQKSGLYDALDVSRDLPKTKSEKRVSFSDSLESTDTPIERPSFKMTPSK
EKIEQLLDQISTPPTARESQVRSLGLRSPGRQNPRSQLEKMKLQKELLQLHNSRMASMVRMQDDNESETSIESNTSDSGR
GGSESDIHSTLGQIHVPEIVTMGANLRPYHYFNFKNSLDNFQRHSISDVVSESVATYDEYDNASTTTSGSYTVDDLDADF
RSDVIV

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