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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_784.1_14558
Locus scaffold784.1 : 203952 ... 211562 : +
To GenomeBrowser scaffold784.1:203952..211562
Genes list of scaffold scaffold784.1
Synonym pfu_aug1.0_6225.1_67396

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_784.1_14558.t1 5 1 Cadherin_2 12 99 1.7e-12 46.7 5.8e-13 2.9e-09 36.3
pfu_aug2.0_784.1_14558.t1 7 1 Cadherin 46 86 0.0 308.7 7.4e-06 0.037 14.2
pfu_aug2.0_784.1_14558.t1 7 2 Cadherin 133 226 0.0 308.7 2.9e-13 1.4e-09 38.0
pfu_aug2.0_784.1_14558.t1 5 2 Cadherin_2 184 197 1.7e-12 46.7 0.11 530.0 0.2
pfu_aug2.0_784.1_14558.t1 7 3 Cadherin 240 334 0.0 308.7 2.6e-20 1.3e-16 60.6
pfu_aug2.0_784.1_14558.t1 7 4 Cadherin 357 442 0.0 308.7 1.1e-13 5.6e-10 39.3
pfu_aug2.0_784.1_14558.t1 5 3 Cadherin_2 359 373 1.7e-12 46.7 0.23 1100.0 -0.8
pfu_aug2.0_784.1_14558.t1 7 5 Cadherin 459 548 0.0 308.7 2.0e-15 1.0e-11 44.9
pfu_aug2.0_784.1_14558.t1 5 4 Cadherin_2 496 520 1.7e-12 46.7 0.13 630.0 0.0
pfu_aug2.0_784.1_14558.t1 7 6 Cadherin 563 652 0.0 308.7 5.9e-25 2.9e-21 75.5
pfu_aug2.0_784.1_14558.t1 5 5 Cadherin_2 564 582 1.7e-12 46.7 0.066 330.0 0.9
pfu_aug2.0_784.1_14558.t1 7 7 Cadherin 672 757 0.0 308.7 1.6e-13 7.9e-10 38.8

Transcript
Transcript IDpfu_aug2.0_784.1_14558.t1
Definition-
>pfu_aug2.0_784.1_14558.t1
atgagaacttatattggtgccatagccaggacggtgctgtattcgatggatgaagaaaatgaccaagaccatattctggg
gaacgtatcgcaggatgcaaatttaagggaccttcttggacccgcggacaatcttaccgacttaaggtacaccatcctta
ctacggggaatcaagtggcgtctttgttcactattgacggtaagacgagtactttgtcaacaaatcaggttcttgaccgg
gatacattgtgtcagtatgatcctgtttgcattttgaaatttgatgttgttgcaaagtcagaagttacggacttctttca
taaaataacagtttctgtgacgctaaaagacataaatgataatactccagagtttccagatcccgtcgtcgaggttcctc
tggcggaaaattctgtcatcggcacagaaacgccgctggcaggtgcgatagacctggactctgggaacaattctgtccaa
gcctacaggatatttccggaaagtgtgcctttcatcatcaatgaagaattctatcccgatggaagatcgacactgcgcct
cgttgtttcaagaaaattggacagggaaactgaagataggtatagatttaagattttggcattggacagaggaaatcctg
tcaaaacgggttctgtaataattgatgtaaatgttttggatatcaacgacaacccgcctaattttgaaaaagatatttat
aacatctctattgctgaggatttccctctgaacaccatgattcttagagtaaaagctctagatagcgatatcggcgagaa
cggagaagtcttctatcgacttagtcaacgacaaaacgacgaaatacgtcgcattttctatattcatccgacatccgggg
aactgagtctcatgacgtcattgataacggagagtcgtcctacgtacacggtgatcgtagaggcatctgataacgcttca
gcaccgctcatatcgcaggctcaaattctcgtaaccgtgttggacacgcataacgcgcaacccgctattaaaactacact
cttctttacacaaaacaactcaaatttcatacatattgtcgaaaatgtgaaaaatggtacagttatagcatcgatatctg
ccgtggaccctgacaaaggtttaaacggccaggtggattgtgtctccaatgactcagactttcgtttatggaaagttgag
acaaacgggtataccttggctgtatttgggaaattaaaccgtgaattgtcagagaaacataatatcaagatccagtgtac
agataaaggagctcccccgaaaagtgcgtttgaaattatcacggttatacttactgatgtcaatgataacgcaccaaaat
tcacgcaagatgtctaccgcgttgaaaagccggaaaatgagcccaacagcagtatattccaggttatagcaaacgattcc
gacattacaccgacgtctataacttattttataagtaataccagcgatgcggttgaaaatttctatgtagatagttcctc
cgggattgtctataataaaagacctcttgaccgggagctatcatcattcatcagcattcctgtagttgctagggacaaca
agcctccttttcataccggaagtgccattctggaagtaatcgttctagatgtcaatgacaatgcaccatattttctccat
gataaatataattttagtctgttagaaaaccaacccacaaatactttcgtaggaaaagtctttgctgaagacaaagacga
aggcaagaatgccgaggttaccttttctgctcaaaatattaatgatttaccatttagaatattctcaaacggctctattt
ttacaacaaggccgttggacagagaagcatctgcccagtatacgataagtgtagtggccagagatcgtggtagtccggcc
ttgtccaatgttactaatgtgacagtgtcagtcctggacgtcaatgataatagtcccaaaatccatgttcaagaggtact
ccgtatatctcagtttacgccagcaaatactcagttctttgtcatcaatgcaacagacgatgattttgaaacgaattctc
agttaatttatgacattgaggaccagagtaacgtctcaaaaattatatcaatcaacaaactacaagggcagctaagactt
gtgagaagtctgacgtctgacgacgtcggacaatacaaatgtgttgtcatagtgacagatatgggtaattcaccccgaac
ttcctctgcttcttttaccattttcgtcacacgtgacgacatctctacgcaaaaatatacctcagaggccgccattaagt
attacgccattgctgtggcgatctgttgtgttactatagtgctttcgtctgtgataattctagtcatttgtctcattcgc
cgaaaagatcgtctggagggagataaaacgaacagcagtattacgtcacaagtgacgcaagactctgatctaagtcaaat
ggacatgcgtattaacgacacttatagtacagactatgtgccaggaacgttgatgaagagtttcagtggcgccctacatg
gtttaccattatgtagcattaaaacatctcgagtagaagctataaagattgagataatgtcaatccttaaacctagattt
gaagaggaggattccgatgagactccaccggaagtaatttcagaagacgtcacaatttgggactggaaccaaccttatac
gcatgcgtacagatcgcttgatcaatactccccggatgaacccccaaatatttacggcatggatcagaagaactatatgg
gcccaaatgtggtaagactttgtacttttacaacttgtgcatgtttgatcattttgctcgccaagattccggatattttc
aagtaa

Protein
Protein IDpfu_aug2.0_784.1_14558.t1
Definition-
>pfu_aug2.0_784.1_14558.t1
MRTYIGAIARTVLYSMDEENDQDHILGNVSQDANLRDLLGPADNLTDLRYTILTTGNQVASLFTIDGKTSTLSTNQVLDR
DTLCQYDPVCILKFDVVAKSEVTDFFHKITVSVTLKDINDNTPEFPDPVVEVPLAENSVIGTETPLAGAIDLDSGNNSVQ
AYRIFPESVPFIINEEFYPDGRSTLRLVVSRKLDRETEDRYRFKILALDRGNPVKTGSVIIDVNVLDINDNPPNFEKDIY
NISIAEDFPLNTMILRVKALDSDIGENGEVFYRLSQRQNDEIRRIFYIHPTSGELSLMTSLITESRPTYTVIVEASDNAS
APLISQAQILVTVLDTHNAQPAIKTTLFFTQNNSNFIHIVENVKNGTVIASISAVDPDKGLNGQVDCVSNDSDFRLWKVE
TNGYTLAVFGKLNRELSEKHNIKIQCTDKGAPPKSAFEIITVILTDVNDNAPKFTQDVYRVEKPENEPNSSIFQVIANDS
DITPTSITYFISNTSDAVENFYVDSSSGIVYNKRPLDRELSSFISIPVVARDNKPPFHTGSAILEVIVLDVNDNAPYFLH
DKYNFSLLENQPTNTFVGKVFAEDKDEGKNAEVTFSAQNINDLPFRIFSNGSIFTTRPLDREASAQYTISVVARDRGSPA
LSNVTNVTVSVLDVNDNSPKIHVQEVLRISQFTPANTQFFVINATDDDFETNSQLIYDIEDQSNVSKIISINKLQGQLRL
VRSLTSDDVGQYKCVVIVTDMGNSPRTSSASFTIFVTRDDISTQKYTSEAAIKYYAIAVAICCVTIVLSSVIILVICLIR
RKDRLEGDKTNSSITSQVTQDSDLSQMDMRINDTYSTDYVPGTLMKSFSGALHGLPLCSIKTSRVEAIKIEIMSILKPRF
EEEDSDETPPEVISEDVTIWDWNQPYTHAYRSLDQYSPDEPPNIYGMDQKNYMGPNVVRLCTFTTCACLIILLAKIPDIF
K

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