Gene
| Gene Model ID | pfu_aug2.0_7843.1_12954 |
|---|---|
| Locus | scaffold7843.1 : 1 ... 5419 : + |
| To GenomeBrowser | scaffold7843.1:1..5419 |
| Genes list of scaffold | scaffold7843.1 |
| Synonym | pfu_aug1.0_10295.1_24714 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_7843.1_12954.t1 | 5 | 1 | LRR_4 | 1 | 34 | 4.8e-23 | 80.3 | 5.5e-09 | 1.6e-05 | 24.3 |
| pfu_aug2.0_7843.1_12954.t1 | 5 | 1 | LRR_8 | 1 | 56 | 2.1e-20 | 72.2 | 2.4e-12 | 7.0e-09 | 35.3 |
| pfu_aug2.0_7843.1_12954.t1 | 9 | 1 | LRR_1 | 1 | 20 | 1.9e-17 | 60.6 | 0.00056 | 1.7 | 9.0 |
| pfu_aug2.0_7843.1_12954.t1 | 8 | 1 | LRR_7 | 1 | 12 | 6.0e-08 | 31.6 | 0.042 | 120.0 | 3.5 |
| pfu_aug2.0_7843.1_12954.t1 | 8 | 2 | LRR_7 | 22 | 37 | 6.0e-08 | 31.6 | 0.0031 | 9.1 | 6.9 |
| pfu_aug2.0_7843.1_12954.t1 | 9 | 2 | LRR_1 | 23 | 39 | 1.9e-17 | 60.6 | 0.00016 | 0.48 | 10.6 |
| pfu_aug2.0_7843.1_12954.t1 | 5 | 2 | LRR_4 | 44 | 82 | 4.8e-23 | 80.3 | 7.9e-09 | 2.3e-05 | 23.8 |
| pfu_aug2.0_7843.1_12954.t1 | 5 | 2 | LRR_8 | 45 | 94 | 2.1e-20 | 72.2 | 1.9e-06 | 0.0057 | 16.3 |
| pfu_aug2.0_7843.1_12954.t1 | 8 | 3 | LRR_7 | 45 | 60 | 6.0e-08 | 31.6 | 0.0056 | 17.0 | 6.2 |
| pfu_aug2.0_7843.1_12954.t1 | 9 | 3 | LRR_1 | 46 | 61 | 1.9e-17 | 60.6 | 0.00099 | 2.9 | 8.2 |
| pfu_aug2.0_7843.1_12954.t1 | 8 | 4 | LRR_7 | 67 | 81 | 6.0e-08 | 31.6 | 1.1 | 3200.0 | -0.7 |
| pfu_aug2.0_7843.1_12954.t1 | 9 | 4 | LRR_1 | 68 | 85 | 1.9e-17 | 60.6 | 0.062 | 180.0 | 2.7 |
| pfu_aug2.0_7843.1_12954.t1 | 5 | 3 | LRR_8 | 142 | 157 | 2.1e-20 | 72.2 | 0.55 | 1600.0 | -1.1 |
| pfu_aug2.0_7843.1_12954.t1 | 5 | 3 | LRR_4 | 144 | 156 | 4.8e-23 | 80.3 | 1.6 | 4700.0 | -2.7 |
| pfu_aug2.0_7843.1_12954.t1 | 9 | 5 | LRR_1 | 144 | 157 | 1.9e-17 | 60.6 | 2.2 | 6500.0 | -2.0 |
| pfu_aug2.0_7843.1_12954.t1 | 5 | 4 | LRR_8 | 167 | 207 | 2.1e-20 | 72.2 | 5.6e-06 | 0.017 | 14.8 |
| pfu_aug2.0_7843.1_12954.t1 | 5 | 4 | LRR_4 | 168 | 205 | 4.8e-23 | 80.3 | 2.2e-05 | 0.065 | 12.8 |
| pfu_aug2.0_7843.1_12954.t1 | 8 | 5 | LRR_7 | 168 | 181 | 6.0e-08 | 31.6 | 0.011 | 33.0 | 5.2 |
| pfu_aug2.0_7843.1_12954.t1 | 9 | 6 | LRR_1 | 169 | 183 | 1.9e-17 | 60.6 | 0.0034 | 10.0 | 6.6 |
| pfu_aug2.0_7843.1_12954.t1 | 9 | 7 | LRR_1 | 191 | 208 | 1.9e-17 | 60.6 | 0.0048 | 14.0 | 6.1 |
| pfu_aug2.0_7843.1_12954.t1 | 8 | 6 | LRR_7 | 191 | 204 | 6.0e-08 | 31.6 | 0.032 | 95.0 | 3.9 |
| pfu_aug2.0_7843.1_12954.t1 | 5 | 5 | LRR_8 | 213 | 246 | 2.1e-20 | 72.2 | 8.7e-08 | 0.00026 | 20.6 |
| pfu_aug2.0_7843.1_12954.t1 | 9 | 8 | LRR_1 | 213 | 234 | 1.9e-17 | 60.6 | 2.8e-06 | 0.0083 | 16.0 |
| pfu_aug2.0_7843.1_12954.t1 | 8 | 7 | LRR_7 | 213 | 228 | 6.0e-08 | 31.6 | 0.00013 | 0.4 | 11.0 |
| pfu_aug2.0_7843.1_12954.t1 | 5 | 5 | LRR_4 | 214 | 246 | 4.8e-23 | 80.3 | 5.1e-10 | 1.5e-06 | 27.6 |
| pfu_aug2.0_7843.1_12954.t1 | 9 | 9 | LRR_1 | 237 | 247 | 1.9e-17 | 60.6 | 0.0088 | 26.0 | 5.3 |
| pfu_aug2.0_7843.1_12954.t1 | 8 | 8 | LRR_7 | 237 | 246 | 6.0e-08 | 31.6 | 0.51 | 1500.0 | 0.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_7843.1_12954.t1 | gi|676463920|ref|XP_009056756.1| | hypothetical protein LOTGIDRAFT_190595 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_7843.1_12954.t1 | gi|524897410|ref|XP_005105166.1| | PREDICTED: leucine-rich repeat-containing protein 40-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_7843.1_12954.t1 | gi|557018408|ref|XP_006009583.1| | PREDICTED: leucine-rich repeat-containing protein 40 isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_7843.1_12954.t1 | gi|148230653|ref|NP_001085672.1| | leucine-rich repeat-containing protein 40 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_7843.1_12954.t1 | gi|632981496|ref|XP_007907624.1| | PREDICTED: leucine-rich repeat-containing protein 40 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_7843.1_12954.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7843.1_12954.t1 gagcttcatctaggtaacaatcagatcaaagagattacaccagaacatctcaaacatctctcatctgtcacagtcctgga catgcgagataataagctgacagtacttccagatgagatagtgtttcttacaggtttacagaggatagacctcaccaata atgatctgacagggctgccatacattttgggtacaatcacgtcactgaagtcagtggttctagatggcaatccaatgaaa tcaattaggagggatatcataatgagagggactgttgaattgaagaaatacctagtcagtagaatggaggcgcctgaacc tgtagtccaatcaaataagggcttacaaaacggatcaggaggagattctggtatcattggtggatctggagacggactca aggctcatgatatacatcagaataaagctttagattttagcaagaaaggtataagtgagataccagacgatgtttgggat gtagccgtcaagagtggtgtgaccaatgttaacctgaataggaacaattttacacaacttccttcaacggtcttactagt gagtgatactttgaaagagttataccttgggtttaacaaggtagcttcactgagttcagatataggacttctgtttcacc tgactactttggacttaaggaacaatatgttatctgagcttccttcagacatgaaatccctgaatgagctgagagagatc aatctatcatgcaacagaccgagatgttcatcaaactttgtgtaa |
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Protein
| Protein ID | pfu_aug2.0_7843.1_12954.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7843.1_12954.t1 ELHLGNNQIKEITPEHLKHLSSVTVLDMRDNKLTVLPDEIVFLTGLQRIDLTNNDLTGLPYILGTITSLKSVVLDGNPMK SIRRDIIMRGTVELKKYLVSRMEAPEPVVQSNKGLQNGSGGDSGIIGGSGDGLKAHDIHQNKALDFSKKGISEIPDDVWD VAVKSGVTNVNLNRNNFTQLPSTVLLVSDTLKELYLGFNKVASLSSDIGLLFHLTTLDLRNNMLSELPSDMKSLNELREI NLSCNRPRCSSNFV |
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