Gene
| Gene Model ID | pfu_aug2.0_788.1_27781 |
|---|---|
| Locus | scaffold788.1 : 123196 ... 145585 : - |
| To GenomeBrowser | scaffold788.1:123196..145585 |
| Genes list of scaffold | scaffold788.1 |
| Synonym | pfu_aug1.0_35332.1_55528 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_788.1_27781.t1 | 1 | 1 | PWI | 92 | 145 | 7.1e-12 | 45.2 | 1.0e-15 | 1.5e-11 | 44.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_788.1_27781.t1 | gi|556954203|ref|XP_005988816.1| | PREDICTED: serine/arginine repetitive matrix protein 1-like isoform X4 [Latimeria chalumnae] | 2.0e-25 |
| pfu_aug2.0_788.1_27781.t1 | gi|556954194|ref|XP_005988813.1| | PREDICTED: serine/arginine repetitive matrix protein 1-like isoform X1 [Latimeria chalumnae] | 2.0e-25 |
| pfu_aug2.0_788.1_27781.t1 | gi|556954197|ref|XP_005988814.1| | PREDICTED: serine/arginine repetitive matrix protein 1-like isoform X2 [Latimeria chalumnae] | 2.0e-25 |
| pfu_aug2.0_788.1_27781.t1 | gi|512929791|ref|XP_004931910.1| | PREDICTED: serine/arginine repetitive matrix protein 1 isoform X1 [Bombyx mori] | 1.0e-21 |
| pfu_aug2.0_788.1_27781.t1 | gi|658916115|ref|XP_008397817.1| | PREDICTED: serine/arginine repetitive matrix protein 1 isoform X3 [Poecilia reticulata] | 4.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_788.1_27781.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_788.1_27781.t1 atgctcactgtgaaagaaaatactcttaaatggggaaatttctatgataattttggcgtgacattctccatagactacag cgaaataaaatgccgtggcagggagttattaaatcggtatctagataatatttctaggagttcaaactcggatggggagg gtaccacagcggatcaggataacagattttcagacaagaagaaaaaactcatgaaatccatgagattttcagaagggatt gaaagaaaggtcgacatgactaaagtgaatgtggacactataaaaccatggatagcccaaagaattacagagttattgac cctagaagatgacgttgtcgtggaatttgtatataatcagttggaagaacgggctgagcaagaaaggattcaggccaatt tgaaaaggcacgaggaaaatatcagggagcagctcactaaagagaaagaagacaaaaatagaaaaaagtcaagacattcc agatcaagaagtcgatccagagaggactctttgaagaaagagataaagaaggagaaaagtatgtcaccaacccccggcaa agaagaaatcaaaaccgaagtgaaagaagaaccaactgatatcaaacctgaggctgtaaatggagatgctgctgaagaag aaaaagccacagaaaagacagatatagtatctgaggcaaaggctggagaaagcaaggaagaaaaagagaaacaaccctcc aagtctagagatgctgctgaagaagaaaaagccacagaaaagacagatatagtatctgaggcaaaggctggagaaagcaa ggaagaaaaagagaaacaaccctccaagtctaggtcaaggtcaagatctagaagtagcagtaaaaagaggaaaggatcaa gatcaagggacaagcggtcaaggtcaaaagacaaaagatctaggtcaagagataaaagatctaggtcaagagataagaga tcaaggtcaagagataagagatcaagatctagggacaagaggtcaaggtcaagagatcgtagatcaagggacagaaggtc aaggtcaagagataggaggagatcatcaagatcaccaagaagaagaaggtcaccgcacagacgatccagatctagagatc gggatggaaggagaagattttccccataccgacgttcccgttatagtccagtgtctagaagatcgcctccgagacgaaga agtccacctcgtcacagatctatatcccctagaagaaaggacgaggatagagggcggggacgtagatcacccagaaggag tgtagatagagatcgggagagagcaaaaccgtcaaggagatctaaaagctcggagtcgtcaagtggatcaagtagctccg actcagatggaccaaagaaaaaggctgcagcaatgaaagccaagaaggcagcaggtgatgaaagtggatcagagccgaca gactcaccagacaagatgggagtacagcaaagacgtcagtacaggaaacacgacatggacgaatctgaggacagctcttc atcatcctcatcatcctctgatgaaggttcacgaggtaattacataaaacctacatgtatacagtataaagatgtcagta tagaaaacatgacatggaggaatctgaggacagttcctcttcatactcatcatcctctgatgaaggttcacaagatactg tataaagacgtcagtacaggaaacacgacatggaggaatctgaggacagttcctcatcatcctcatcatcctctgatgaa ggttcacgaggtagagactcagaaacacgacatggaagagtctgatgatggctctctagtaaacttagaggattctgagg ccaagtcttttccgttaaagatatgcatgaacggaaatccccagatcgccgtagacgaggaccttcccctgtacggagat cagatagacgttccccaccccccaggggagatattcccctcccagaaggcgattcagccccggtcctacagacgatcccc tcccagatacatgtcacccccaagacgacaaaggcgtgtctcaccctcaccttactatgaacaaagaagcccggttagaa gatatggaggtaggtctcccccaaggcgtggacgatccccagggtgggatgattacagtaggaggcgacgcccatccccc tcaccggcatataggcgtggtcactccagatctccacccccacagttccactcccctccatcacgtaggagagatgaatc tccaccccagagacgcggcagggatgagagccctgtagaaagaaagagggtctccagaagaggtgatgaagaacaaccca ggaggagaagagatgattcattccaagaagaagatgaaagaggaaaaaggccatctagaagaggggacagtgaaagcata tctcctgtagagaaaaagagaatgaagataccaccgagaaaggaagaatcctcatcagaggaagagtctgagtctgcctc aancgagtttgaacgagttttgaaattttatatacatttacatgtacaattaaatttaaacatcttacaatatttcagaa gcccggttagaagatttggaggtaggtctcccccaaggcgtggccgatccccagggtgggatgattacagtaggaggcga cgcccatccccctcaccggcatataggcgtggtcactccagatctccacctccacagttccactcccctccatcacgtag gagagacgaatctccaccccagagacgcggcagggatgagagccctgtagaaagaaagagggtctcaagaagaggtgctc tatttggttttgaggttaaccatgtggttgccattattagggatgcattgctaaagattgtgagatccccttatctatta gattttgactttattacagtaaaggaggaggacagcgacaatgaggagttagagcagcagatgagacgacgagccttaca gtccatgaagcaatccagacgggcagacaccgacagcgactga |
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Protein
| Protein ID | pfu_aug2.0_788.1_27781.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_788.1_27781.t1 MLTVKENTLKWGNFYDNFGVTFSIDYSEIKCRGRELLNRYLDNISRSSNSDGEGTTADQDNRFSDKKKKLMKSMRFSEGI ERKVDMTKVNVDTIKPWIAQRITELLTLEDDVVVEFVYNQLEERAEQERIQANLKRHEENIREQLTKEKEDKNRKKSRHS RSRSRSREDSLKKEIKKEKSMSPTPGKEEIKTEVKEEPTDIKPEAVNGDAAEEEKATEKTDIVSEAKAGESKEEKEKQPS KSRDAAEEEKATEKTDIVSEAKAGESKEEKEKQPSKSRSRSRSRSSSKKRKGSRSRDKRSRSKDKRSRSRDKRSRSRDKR SRSRDKRSRSRDKRSRSRDRRSRDRRSRSRDRRRSSRSPRRRRSPHRRSRSRDRDGRRRFSPYRRSRYSPVSRRSPPRRR SPPRHRSISPRRKDEDRGRGRRSPRRSVDRDRERAKPSRRSKSSESSSGSSSSDSDGPKKKAAAMKAKKAAGDESGSEPT DSPDKMGVQQRRQYRKHDMDESEDSSSSSSSSSDEGSRGNYIKPTCIQYKDVSIENMTWRNLRTVPLHTHHPLMKVHKIL YKDVSTGNTTWRNLRTVPHHPHHPLMKVHEVETQKHDMEESDDGSLVNLEDSEAKSFPLKICMNGNPQIAVDEDLPLYGD QIDVPHPPGEIFPSQKAIQPRSYRRSPPRYMSPPRRQRRVSPSPYYEQRSPVRRYGGRSPPRRGRSPGWDDYSRRRRPSP SPAYRRGHSRSPPPQFHSPPSRRRDESPPQRRGRDESPVERKRVSRRGDEEQPRRRRDDSFQEEDERGKRPSRRGDSESI SPVEKKRMKIPPRKEESSSEEESESASXEFERVLKFYIHLHVQLNLNILQYFRSPVRRFGGRSPPRRGRSPGWDDYSRRR RPSPSPAYRRGHSRSPPPQFHSPPSRRRDESPPQRRGRDESPVERKRVSRRGALFGFEVNHVVAIIRDALLKIVRSPYLL DFDFITVKEEDSDNEELEQQMRRRALQSMKQSRRADTDSD |
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