Gene
| Gene Model ID | pfu_aug2.0_789.1_31159 |
|---|---|
| Locus | scaffold789.1 : 108766 ... 116730 : + |
| To GenomeBrowser | scaffold789.1:108766..116730 |
| Genes list of scaffold | scaffold789.1 |
| Synonym | pfu_aug1.0_20658.1_33124 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_789.1_31159.t1 | 1 | 1 | MAM | 8 | 130 | 1.6e-18 | 67.0 | 2.6e-22 | 1.9e-18 | 66.7 |
| pfu_aug2.0_789.1_31159.t1 | 1 | 1 | Ldl_recept_a | 149 | 185 | 6.2e-12 | 45.2 | 1.5e-15 | 1.1e-11 | 44.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_789.1_31159.t1 | gi|390360585|ref|XP_001196717.2| | 1.0e-15 | |
| pfu_aug2.0_789.1_31159.t1 | gi|196011465|ref|XP_002115596.1| | hypothetical protein TRIADDRAFT_59475 [Trichoplax adhaerens] | 1.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_789.1_31159.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_789.1_31159.t1 atgaataatttctcctttattacaggatattacgtgtatgcagaaggtagccatggtcaggaaggagagtatgcctatat aacgtccgttccttttactacttctgtaaaccaaagtcttacattttattaccatatttatgatgaaaggcccgatgtcg tgaccgaaggtttggcagtggtagcaaaatataacgattctgtgagcaacgagttatggtggcggaattcgtctaccggc aatgtatggacctatgcctgtattgatcttgtaccgaacaaaaatttacagattgctttcgtagctaggaagcaaatacc tagcattgtgggtaattacgatgctgatgtggctgtggatgacgtccttctacagaaccaaatgtgtgcaggtactgtac catcaacaacaaatccttcacctgtccctaccaccacttcaacaccaggatgcgctcctgatgagttcagatgtctggat ggtctatgtataagtgcaggcttacgatgtgatggtgtttctgattgttttgatttttcggacgaggataactgcccttc gtga |
|
Protein
| Protein ID | pfu_aug2.0_789.1_31159.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_789.1_31159.t1 MNNFSFITGYYVYAEGSHGQEGEYAYITSVPFTTSVNQSLTFYYHIYDERPDVVTEGLAVVAKYNDSVSNELWWRNSSTG NVWTYACIDLVPNKNLQIAFVARKQIPSIVGNYDADVAVDDVLLQNQMCAGTVPSTTNPSPVPTTTSTPGCAPDEFRCLD GLCISAGLRCDGVSDCFDFSDEDNCPS |
|