Gene
| Gene Model ID | pfu_aug2.0_79.1_30140 |
|---|---|
| Locus | scaffold79.1 : 56936 ... 73915 : - |
| To GenomeBrowser | scaffold79.1:56936..73915 |
| Genes list of scaffold | scaffold79.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_79.1_30140.t1 | 9 | 1 | LRR_4 | 9 | 43 | 2.7e-08 | 33.2 | 0.00023 | 1.7 | 8.3 |
| pfu_aug2.0_79.1_30140.t1 | 9 | 2 | LRR_4 | 46 | 65 | 2.7e-08 | 33.2 | 0.00033 | 2.4 | 7.8 |
| pfu_aug2.0_79.1_30140.t1 | 9 | 3 | LRR_4 | 114 | 148 | 2.7e-08 | 33.2 | 0.0001 | 0.77 | 9.4 |
| pfu_aug2.0_79.1_30140.t1 | 9 | 4 | LRR_4 | 206 | 224 | 2.7e-08 | 33.2 | 0.31 | 2300.0 | -1.7 |
| pfu_aug2.0_79.1_30140.t1 | 9 | 5 | LRR_4 | 224 | 235 | 2.7e-08 | 33.2 | 0.0075 | 56.0 | 3.5 |
| pfu_aug2.0_79.1_30140.t1 | 9 | 6 | LRR_4 | 252 | 284 | 2.7e-08 | 33.2 | 0.018 | 140.0 | 2.2 |
| pfu_aug2.0_79.1_30140.t1 | 9 | 7 | LRR_4 | 323 | 336 | 2.7e-08 | 33.2 | 0.3 | 2200.0 | -1.7 |
| pfu_aug2.0_79.1_30140.t1 | 9 | 8 | LRR_4 | 385 | 434 | 2.7e-08 | 33.2 | 6.7e-05 | 0.5 | 10.0 |
| pfu_aug2.0_79.1_30140.t1 | 9 | 9 | LRR_4 | 478 | 489 | 2.7e-08 | 33.2 | 0.1 | 750.0 | -0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_79.1_30140.t1 | gi|291223919|ref|XP_002731956.1| | PREDICTED: F-box/LRR-repeat protein 15-like [Saccoglossus kowalevskii] | 1.0e-28 |
| pfu_aug2.0_79.1_30140.t1 | gi|260799298|ref|XP_002594634.1| | hypothetical protein BRAFLDRAFT_121756 [Branchiostoma floridae] | 1.0e-24 |
| pfu_aug2.0_79.1_30140.t1 | gi|743932177|ref|XP_011010379.1| | PREDICTED: F-box/LRR-repeat protein 15-like [Populus euphratica] | 6.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_79.1_30140.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_79.1_30140.t1 atgctggacattttacgacaatgtcccaagcttgagacaatggtcatcagtaaccctgagatgaccaatagctctattga tgctatttgtgccaaatgtaccaagttaagagagttatcaatagaagatacctttaacattacaaacaacgctatcatag atctggtttccatatctagcctcaggaaactcaaaatcaattcgtgtgagaatattgtagttccagaaatttttcataga gatggtgaggatttacctttaaacattacacatctcagtttgtgtggtatagcagtaagcaacaattgtattaggagtgc tctggtacactgccgttgtctagaagtccttgacctttcatcttcatggggaatcagccatttcaaatttcaagaccttc ctgttcagaatggactgaattccttaaagagattaatcctaagatccttcccagatctttttgaagtacagttaccactg tgtcccaagttactgtacatagacgttaaatattgtaattcccttacatcactagttgcagctgctccttcgttaaaagt gttgaaagccagtcatttgaccagtttgagaaagctggagttagttccctctagtctggaagtgctcaaccttaatttcc cgtatttagaagaactacatataagtagtgagaatttacagacactcagccttatacagtgttccaggttaacatgtgac acattaatgacagctattccacacaaagacactttaacttgtttacacattgaggaatgcagactgattactcaggagga tatccaggaagtggtcttacagaaattcccaaggttagaaagtttcactctccttcacgagtccttgtcacctcttatac tggaggagtttatacgaccttggagtgacataaagattaattcccctgtcctcaaacaactacactttggggtatgtaag cgtatatcgtgtttacctatgaacattcccagcctttcccgtcttaagatgtcttcctgtagggacattgtggagtcaga ctttatagatggactgttatatggaaagcaagtaaaacgtgcacggggtatagatggcctaatcaaagagatgaagacag atgatttaccattcacgggtgggatgggggtgcctaacctccgagaacttaacctgattcagatggcaggtattcaagga gatgttctctcacagaatctgtggcaattcaaacaccttagtacactcacactcgaacaatgtgcttttctgaaacaatt gaacttagaacaatgtccttgtttagaaacaatcagtgtgagaagctgtagtcgtctgactaagtttacagtaagacaac tcgccagattaatctacctggatgtaatatggtgtagcatgttacaacagttctccgtacaagcagagcgactggagaag ttagatgtgaccggtacaaattttgctcattttgaccttgagagcagggggataactcaggtttctcttagtggagtttg tacacaggatggacatactctcaaaataagtgaggacattctgaaacaagctatctctttctacttaaggttactacatt ttgataaaagcaaaagggataaactttga |
|
Protein
| Protein ID | pfu_aug2.0_79.1_30140.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_79.1_30140.t1 MLDILRQCPKLETMVISNPEMTNSSIDAICAKCTKLRELSIEDTFNITNNAIIDLVSISSLRKLKINSCENIVVPEIFHR DGEDLPLNITHLSLCGIAVSNNCIRSALVHCRCLEVLDLSSSWGISHFKFQDLPVQNGLNSLKRLILRSFPDLFEVQLPL CPKLLYIDVKYCNSLTSLVAAAPSLKVLKASHLTSLRKLELVPSSLEVLNLNFPYLEELHISSENLQTLSLIQCSRLTCD TLMTAIPHKDTLTCLHIEECRLITQEDIQEVVLQKFPRLESFTLLHESLSPLILEEFIRPWSDIKINSPVLKQLHFGVCK RISCLPMNIPSLSRLKMSSCRDIVESDFIDGLLYGKQVKRARGIDGLIKEMKTDDLPFTGGMGVPNLRELNLIQMAGIQG DVLSQNLWQFKHLSTLTLEQCAFLKQLNLEQCPCLETISVRSCSRLTKFTVRQLARLIYLDVIWCSMLQQFSVQAERLEK LDVTGTNFAHFDLESRGITQVSLSGVCTQDGHTLKISEDILKQAISFYLRLLHFDKSKRDKL |
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