Gene
| Gene Model ID | pfu_aug2.0_79.1_30141 |
|---|---|
| Locus | scaffold79.1 : 74056 ... 77240 : + |
| To GenomeBrowser | scaffold79.1:74056..77240 |
| Genes list of scaffold | scaffold79.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_79.1_30141.t1 | 2 | 1 | zf-RING_5 | 3 | 8 | 5.9e-06 | 25.9 | 4.1 | 4100.0 | -2.4 |
| pfu_aug2.0_79.1_30141.t1 | 1 | 1 | zf-C3HC4_3 | 89 | 136 | 1.7e-08 | 33.9 | 2.6e-11 | 2.5e-08 | 33.4 |
| pfu_aug2.0_79.1_30141.t1 | 1 | 1 | zf-RING_2 | 90 | 131 | 4.4e-14 | 52.0 | 6.6e-17 | 6.5e-14 | 51.4 |
| pfu_aug2.0_79.1_30141.t1 | 2 | 2 | zf-RING_5 | 90 | 131 | 5.9e-06 | 25.9 | 9.1e-09 | 9.0e-06 | 25.3 |
| pfu_aug2.0_79.1_30141.t1 | 1 | 1 | zf-rbx1 | 90 | 131 | 7.1e-06 | 26.0 | 1.8e-08 | 1.8e-05 | 24.7 |
| pfu_aug2.0_79.1_30141.t1 | 1 | 1 | zf-C3HC4_2 | 91 | 131 | 2.8e-08 | 33.6 | 4.9e-11 | 4.9e-08 | 32.8 |
| pfu_aug2.0_79.1_30141.t1 | 1 | 1 | zf-C3HC4 | 91 | 131 | 7.0e-08 | 32.0 | 1.2e-10 | 1.2e-07 | 31.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_79.1_30141.t1 | gi|676482191|ref|XP_009062618.1| | hypothetical protein LOTGIDRAFT_179337 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_79.1_30141.t1 | gi|241601356|ref|XP_002405290.1| | RING finger motif containing protein [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_79.1_30141.t1 | gi|675853622|ref|XP_009012371.1| | hypothetical protein HELRODRAFT_73705 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_79.1_30141.t1 | gi|260811350|ref|XP_002600385.1| | hypothetical protein BRAFLDRAFT_61321 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_79.1_30141.t1 | gi|91095021|ref|XP_970287.1| | PREDICTED: RING finger protein 11 [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_79.1_30141.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_79.1_30141.t1 atgggtaactgtttcaagactccaaatgcagatgacatttcacttttacgaggcagcgacagcagcgaatcttcagacca accaataggtccccctctaccctatcaggaaaggcaaaacagagttccaatttaccatccaagtccaaatgttagtcgac cagcaaatcaactctcggaggaggaacaaatcaaaatagccaagagattgggacttattagtcatctacctactggtgta tatgatgggagtagtaaaaagggaaaagagtgtgcaatatgtatgggtgaatttaccctgggtgaatcacttcgttttct gccatgcatgcatacataccataaggactgtatagacgattggttaatgagagctttcacgtgtccgtcatgtatggaac ctgtagacgctgccttactatcgtcgtatggaacatag |
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Protein
| Protein ID | pfu_aug2.0_79.1_30141.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_79.1_30141.t1 MGNCFKTPNADDISLLRGSDSSESSDQPIGPPLPYQERQNRVPIYHPSPNVSRPANQLSEEEQIKIAKRLGLISHLPTGV YDGSSKKGKECAICMGEFTLGESLRFLPCMHTYHKDCIDDWLMRAFTCPSCMEPVDAALLSSYGT |
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