Gene
| Gene Model ID | pfu_aug2.0_79.1_30144 |
|---|---|
| Locus | scaffold79.1 : 164095 ... 202288 : + |
| To GenomeBrowser | scaffold79.1:164095..202288 |
| Genes list of scaffold | scaffold79.1 |
| Synonym | pfu_aug1.0_3359.1_66660 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_79.1_30144.t2 | 1 | 1 | I-set | 30 | 115 | 4.6e-16 | 58.4 | 5.7e-19 | 8.4e-16 | 57.6 |
| pfu_aug2.0_79.1_30144.t2 | 2 | 1 | V-set | 33 | 102 | 6.9e-06 | 25.9 | 7.5e-08 | 0.00011 | 22.0 |
| pfu_aug2.0_79.1_30144.t2 | 1 | 1 | Ig_2 | 38 | 105 | 7.8e-10 | 38.7 | 1.4e-12 | 2.0e-09 | 37.4 |
| pfu_aug2.0_79.1_30144.t2 | 1 | 1 | Ig_3 | 39 | 102 | 9.7e-08 | 32.4 | 3.7e-10 | 5.5e-07 | 29.9 |
| pfu_aug2.0_79.1_30144.t2 | 2 | 1 | ig | 39 | 99 | 3.7e-06 | 26.9 | 5.8e-09 | 8.7e-06 | 25.7 |
| pfu_aug2.0_79.1_30144.t2 | 2 | 1 | Kringle | 151 | 173 | 5.0e-06 | 26.5 | 7.6 | 11000.0 | -3.5 |
| pfu_aug2.0_79.1_30144.t2 | 1 | 1 | Fz | 171 | 272 | 5.2e-13 | 49.3 | 7.9e-16 | 1.2e-12 | 48.2 |
| pfu_aug2.0_79.1_30144.t2 | 2 | 2 | Kringle | 296 | 329 | 5.0e-06 | 26.5 | 3.4e-09 | 5.0e-06 | 26.5 |
| pfu_aug2.0_79.1_30144.t2 | 2 | 1 | Pkinase_Tyr | 405 | 673 | 0.0 | 321.9 | 0.0 | 0.0 | 320.9 |
| pfu_aug2.0_79.1_30144.t2 | 1 | 1 | Pkinase | 405 | 670 | 0.0 | 164.3 | 0.0 | 0.0 | 163.6 |
| pfu_aug2.0_79.1_30144.t2 | 2 | 2 | V-set | 545 | 577 | 6.9e-06 | 25.9 | 0.95 | 1400.0 | -0.9 |
| pfu_aug2.0_79.1_30144.t2 | 2 | 2 | ig | 699 | 715 | 3.7e-06 | 26.9 | 10.0 | 15000.0 | -4.1 |
| pfu_aug2.0_79.1_30144.t2 | 2 | 2 | Pkinase_Tyr | 847 | 878 | 0.0 | 321.9 | 2.9 | 4300.0 | -3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_79.1_30144.t2 | gi|525006115|ref|XP_005050731.1| | PREDICTED: tyrosine-protein kinase transmembrane receptor ROR1 [Ficedula albicollis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_79.1_30144.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_79.1_30144.t1 atgacaaaacgtacgcggattatttttgtgtcttggattttactaatttttggatccgctgtaacatcaaacagacaaag aggatctaagaattatcccaaaaaatgggacattccaatacacaaactcaatttacaggacctgttcgacaaagaggggg gcgtatctcgagccattttgaatttggactttcctatgaaaaacatcacaaagtataaaggagacgacgtgcgaatccgc tgtgagatttcggggaatcccctacctcaatattattggtacaaagacgatatacctattggcaaaaaagatgcccggat gaatagtaaaaatactccatggggatctagattgaagatagaaaatgctgacgtgaacgacagtggctggtacacatgta tagcgtctaatgtggccggggaagtcaatgctacagggttcctcaccatcaaaaacgagtaccctccccctggtaagaag gatcgagatggcgggaaatctggcgcgccggacatcagcgacgaggatggaatctttaaagggaattacgccaagacaaa ctacaagaagtacaaggaagaggacaggaagtcccaggagagtggtgtcggtttttgtcaggatttccgtggaagcacat gtgcaacctttttgggaaacaaaaccatttacgtaacatcagaatactcacagggagtcaaggaagaaaaattcataacg ggattcacgattatagcctccacaaaggatatgaccagcgagtgtcagaaatatgccatcaaattcctctgtctcttcac attcccaccatgtgacggcactgtcaccgaccctcaacccgtcaaaatgtgccgggacgaatgtgagatgctggaacaaa agatctgtaaaaacgaatatagactaggaatgaaccatcctatgctagttccgtattggtacaatggtgatattaacggc tataacaacaaggatgattattatagaggtgaccataataaatgcaggaatcccagcggagctccaagtggaccatggtg ttatactgaccccagcttcctacgtaacgagacctgtggaatacccaagtgtatgggtgctgagccagttaataagctga tgtacatccttgtacctggcattatcgtacctctggcactagtcatactgattgccgtggtttgtctgtgccagcggcac aaagcatcaaattccaaggaaggaaactcggtaccttctcagttaaactctgaaacactacctctaacggggaaaggggg aggatgtaggacgaaagaattccaactctcacaaatcagattcttacaggagcttggagagggcgcatttggtaaagttt atcgtggagaggtcgccggaataccagagaaagtcgcaattaaaactctaaaggagaatgccatgccgaaagtgaagaat gatttcaggagagaggtggatctaatgtcagaactacggcatccaaacattgtgtgcttattgggagtgtgtatgaagca agaaccaatgtgtatgttgtttgaacacatgccgtatggagatttacacgaatatctgatatcacactcacctaactctg atatatctagtgaagtaggcgacagtagcggcaagaaaatgattttggaatatccagaaatgttacacattgcgacacag atagctgccggaatggaatatttagctagtcatcattttgtacaccgcgatctggctgccagaaacgtgcttgttggtga aggtctgtccgttaagatttctgattttggtttatctagagacatctattcctctgactactatagagtacagagtaaat ctctgttacctgtcagatggatgccgccagagtcaatcatgtatggaaagtttacaacagagagtgatatctggtcattt ggagtgttattatgggaaatatttagttacggtcttcagccgtattatggatactcaaaccaagaagtaattgaggtagt ccgtgcgcgtcaaattctaccaaatccagatgattgcccgacaaggatttatggtgtaatggtggaatgctggcatgaaa tgccgggaagacgtcctccattcagagaaatccacgcgcgactacgtcagtggaagacggaggttatgatgcaaaatccg cactggagcttgagtcagagtcactcggcacatagtagtagtacacaacacagcacacagagtggtccgagtcaccacag tagtactggcccgagtaacaccaccgccatgaccgggcttacaggaagtagtggtggctcagaccccacacatccacatg gccaaatccaggtcatggcaccaccaaattaccacgaattacccagagtgcattatatgccaaatcagactcatatgccc cctcaccaaatgccgcagtatgctgcgcctcagccgcatcacatgatggaacatccaccggtggtaaacatgaccagtca atccaagccacaacaacaaccactctatccagtgataaatcaaaacggaccttcgaaaatatcacccgcaggctcgatag cctcgagtcaaaagtcatcgataagttctacatcacaagattcgtcccctaactacaaaccagggccagcaactctgccc ctaactcaaacaaatgtgaataattgtgtttcaaatggaccccagttaaatgggccatcaacggactgccaaagatttaa cagtcttatgacacaaaattcttacattcccgaacatcggaccgcagattaccatgagtag |
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| Transcript ID | pfu_aug2.0_79.1_30144.t2 |
| Definition | - |
>pfu_aug2.0_79.1_30144.t2 atgatgatggaaaaacggagaaacaatttcagggacctgttcgacaaagaggggggcgtatctcgagccattttgaattt ggactttcctatgaaaaacatcacaaagtataaaggagacgacgtgcgaatccgctgtgagatttcggggaatcccctac ctcaatattattggtacaaagacgatatacctattggcaaaaaagatgcccggatgaatagtaaaaatactccatgggga tctagattgaagatagaaaatgctgacgtgaacgacagtggctggtacacatgtatagcgtctaatgtggccggggaagt caatgctacagggttcctcaccatcaaaaacgagtaccctccccctggtaagaaggatcgagatggcgggaaatctggcg cgccggacatcagcgacgaggatggaatctttaaagggaattacgccaagacaaactacaagaagtacaaggaagaggac aggaagtcccaggagagtggtgtcggtttttgtcaggatttccgtggaagcacatgtgcaacctttttgggaaacaaaac catttacgtaacatcagaatactcacagggagtcaaggaagaaaaattcataacgggattcacgattatagcctccacaa aggatatgaccagcgagtgtcagaaatatgccatcaaattcctctgtctcttcacattcccaccatgtgacggcactgtc accgaccctcaacccgtcaaaatgtgccgggacgaatgtgagatgctggaacaaaagatctgtaaaaacgaatatagact aggaatgaaccatcctatgctagttccgtattggtacaatggtgatattaacggctataacaacaaggatgattattata gaggtgaccataataaatgcaggaatcccagcggagctccaagtggaccatggtgttatactgaccccagcttcctacgt aacgagacctgtggaatacccaagtgtatgggtgctgagccagttaataagctgatgtacatccttgtacctggcattat cgtacctctggcactagtcatactgattgccgtggtttgtctgtgccagcggcacaaagcatcaaattccaaggaaggaa actcggtaccttctcagttaaactctgaaacactacctctaacggggaaagggggaggatgtaggacgaaagaattccaa ctctcacaaatcagattcttacaggagcttggagagggcgcatttggtaaagtttatcgtggagaggtcgccggaatacc agagaaagtcgcaattaaaactctaaaggagaatgccatgccgaaagtgaagaatgatttcaggagagaggtggatctaa tgtcagaactacggcatccaaacattgtgtgcttattgggagtgtgtatgaagcaagaaccaatgtgtatgttgtttgaa cacatgccgtatggagatttacacgaatatctgatatcacactcacctaactctgatatatctagtgaagtaggcgacag tagcggcaagaaaatgattttggaatatccagaaatgttacacattgcgacacagatagctgccggaatggaatatttag ctagtcatcattttgtacaccgcgatctggctgccagaaacgtgcttgttggtgaaggtctgtccgttaagatttctgat tttggtttatctagagacatctattcctctgactactatagagtacagagtaaatctctgttacctgtcagatggatgcc gccagagtcaatcatgtatggaaagtttacaacagagagtgatatctggtcatttggagtgttattatgggaaatattta gttacggtcttcagccgtattatggatactcaaaccaagaagtaattgaggtagtccgtgcgcgtcaaattctaccaaat ccagatgattgcccgacaaggatttatggtgtaatggtggaatgctggcatgaaatgccgggaagacgtcctccattcag agaaatccacgcgcgactacgtcagtggaagacggaggttatgatgcaaaatccgcactggagcttgagtcagagtcact cggcacatagtagtagtacacaacacagcacacagagtggtccgagtcaccacagtagtactggcccgagtaacaccacc gccatgaccgggcttacaggaagtagtggtggctcagaccccacacatccacatggccaaatccaggtcatggcaccacc aaattaccacgaattacccagagtgcattatatgccaaatcagactcatatgccccctcaccaaatgccgcagtatgctg cgcctcagccgcatcacatgatggaacatccaccggtggtaaacatgaccagtcaatccaagccacaacaacaaccactc tatccagtgataaatcaaaacggaccttcgaaaatatcacccgcaggctcgatagcctcgagtcaaaagtcatcgataag ttctacatcacaagattcgtcccctaactacaaaccagggccagcaactctgcccctaactcaaacaaatgtgaataatt gtgtttcaaatggaccccagttaaatgggccatcaacggactgccaaagatttaacagtcttatgacacaaaattcttac attcccgaacatcggaccgcagattaccatgagtag |
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Protein
| Protein ID | pfu_aug2.0_79.1_30144.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_79.1_30144.t1 MTKRTRIIFVSWILLIFGSAVTSNRQRGSKNYPKKWDIPIHKLNLQDLFDKEGGVSRAILNLDFPMKNITKYKGDDVRIR CEISGNPLPQYYWYKDDIPIGKKDARMNSKNTPWGSRLKIENADVNDSGWYTCIASNVAGEVNATGFLTIKNEYPPPGKK DRDGGKSGAPDISDEDGIFKGNYAKTNYKKYKEEDRKSQESGVGFCQDFRGSTCATFLGNKTIYVTSEYSQGVKEEKFIT GFTIIASTKDMTSECQKYAIKFLCLFTFPPCDGTVTDPQPVKMCRDECEMLEQKICKNEYRLGMNHPMLVPYWYNGDING YNNKDDYYRGDHNKCRNPSGAPSGPWCYTDPSFLRNETCGIPKCMGAEPVNKLMYILVPGIIVPLALVILIAVVCLCQRH KASNSKEGNSVPSQLNSETLPLTGKGGGCRTKEFQLSQIRFLQELGEGAFGKVYRGEVAGIPEKVAIKTLKENAMPKVKN DFRREVDLMSELRHPNIVCLLGVCMKQEPMCMLFEHMPYGDLHEYLISHSPNSDISSEVGDSSGKKMILEYPEMLHIATQ IAAGMEYLASHHFVHRDLAARNVLVGEGLSVKISDFGLSRDIYSSDYYRVQSKSLLPVRWMPPESIMYGKFTTESDIWSF GVLLWEIFSYGLQPYYGYSNQEVIEVVRARQILPNPDDCPTRIYGVMVECWHEMPGRRPPFREIHARLRQWKTEVMMQNP HWSLSQSHSAHSSSTQHSTQSGPSHHSSTGPSNTTAMTGLTGSSGGSDPTHPHGQIQVMAPPNYHELPRVHYMPNQTHMP PHQMPQYAAPQPHHMMEHPPVVNMTSQSKPQQQPLYPVINQNGPSKISPAGSIASSQKSSISSTSQDSSPNYKPGPATLP LTQTNVNNCVSNGPQLNGPSTDCQRFNSLMTQNSYIPEHRTADYHE |
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| Protein ID | pfu_aug2.0_79.1_30144.t2 |
| Definition | - |
>pfu_aug2.0_79.1_30144.t2 MMMEKRRNNFRDLFDKEGGVSRAILNLDFPMKNITKYKGDDVRIRCEISGNPLPQYYWYKDDIPIGKKDARMNSKNTPWG SRLKIENADVNDSGWYTCIASNVAGEVNATGFLTIKNEYPPPGKKDRDGGKSGAPDISDEDGIFKGNYAKTNYKKYKEED RKSQESGVGFCQDFRGSTCATFLGNKTIYVTSEYSQGVKEEKFITGFTIIASTKDMTSECQKYAIKFLCLFTFPPCDGTV TDPQPVKMCRDECEMLEQKICKNEYRLGMNHPMLVPYWYNGDINGYNNKDDYYRGDHNKCRNPSGAPSGPWCYTDPSFLR NETCGIPKCMGAEPVNKLMYILVPGIIVPLALVILIAVVCLCQRHKASNSKEGNSVPSQLNSETLPLTGKGGGCRTKEFQ LSQIRFLQELGEGAFGKVYRGEVAGIPEKVAIKTLKENAMPKVKNDFRREVDLMSELRHPNIVCLLGVCMKQEPMCMLFE HMPYGDLHEYLISHSPNSDISSEVGDSSGKKMILEYPEMLHIATQIAAGMEYLASHHFVHRDLAARNVLVGEGLSVKISD FGLSRDIYSSDYYRVQSKSLLPVRWMPPESIMYGKFTTESDIWSFGVLLWEIFSYGLQPYYGYSNQEVIEVVRARQILPN PDDCPTRIYGVMVECWHEMPGRRPPFREIHARLRQWKTEVMMQNPHWSLSQSHSAHSSSTQHSTQSGPSHHSSTGPSNTT AMTGLTGSSGGSDPTHPHGQIQVMAPPNYHELPRVHYMPNQTHMPPHQMPQYAAPQPHHMMEHPPVVNMTSQSKPQQQPL YPVINQNGPSKISPAGSIASSQKSSISSTSQDSSPNYKPGPATLPLTQTNVNNCVSNGPQLNGPSTDCQRFNSLMTQNSY IPEHRTADYHE |
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