Gene
| Gene Model ID | pfu_aug2.0_79.1_30145 |
|---|---|
| Locus | scaffold79.1 : 206421 ... 211644 : - |
| To GenomeBrowser | scaffold79.1:206421..211644 |
| Genes list of scaffold | scaffold79.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_79.1_30145.t1 | 3 | 1 | GATA | 362 | 396 | 3.4e-15 | 55.0 | 1.6e-18 | 3.4e-15 | 55.0 |
| pfu_aug2.0_79.1_30145.t1 | 3 | 2 | GATA | 397 | 401 | 3.4e-15 | 55.0 | 6.3 | 13000.0 | -4.4 |
| pfu_aug2.0_79.1_30145.t1 | 3 | 3 | GATA | 414 | 419 | 3.4e-15 | 55.0 | 1.4 | 2900.0 | -2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_79.1_30145.t1 | gi|260813396|ref|XP_002601404.1| | hypothetical protein BRAFLDRAFT_103415 [Branchiostoma floridae] | 7.0e-29 |
| pfu_aug2.0_79.1_30145.t1 | gi|585722944|ref|XP_006813549.1| | PREDICTED: nitrogen regulatory protein NUT1-like [Saccoglossus kowalevskii] | 1.0e-28 |
| pfu_aug2.0_79.1_30145.t1 | gi|528481291|ref|XP_005168744.1| | PREDICTED: GATA-type zinc finger protein 1 isoform X1 [Danio rerio] | 1.0e-27 |
| pfu_aug2.0_79.1_30145.t1 | gi|113676109|ref|NP_001038914.1| | GATA-type zinc finger protein 1 [Danio rerio] | 3.0e-27 |
| pfu_aug2.0_79.1_30145.t1 | gi|156376516|ref|XP_001630406.1| | predicted protein [Nematostella vectensis] | 7.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_79.1_30145.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_79.1_30145.t1 atggagatgtcagatctttggccaatacagaacatcagaaccagtgaacatttatcatcgttacccagcatcgataccac gccttgtcaaccacacgattgtgtgacaaatgatcgcacgagccaagaggagcaacttcctattgacttcagcttcaaga aagagatcaaaccagacttgggtatctttggcaagccgagtaacgacgagtctacagctatgggtaactactaccagacc tctgtgtctatatcagcccagtccggcgggcaacagtcactaaaccccagctgtgaacaactgtccataaaatgtgaaca gatacacagcctgaaatgggaaaactcatctttcgttcaaattccacagatgaatgattattctagtgttttgaaaaaca atcgatgtgaatcatcagacttttcaatatccacacagctttcacaaaatcagcgtgtatttgattttagcagtatacct tacattaaaagagaaccagtgacagaaccatcgagttcatacgttcccaggacgacgatgaaacaagtccaaaactcgtg tgttcattcagcattacaaatcggtggagaaggcggaagcggaactattgctgttccagaaacggaacaggaaacatctg tactaaggcagaaattagaactttatccattctggatccgcccctttgatacctccttgaaaataaacaaatccatggat ccatcttccctaaatataagttattcaaatttgataccgcaagaattcacaattactaacatgataggactgccgctttc ctgtacgacaaggagaagaccgcggctactcgctcctaaagtggaggacgattttgtaaagccagatacgaccatattac cgttcccaaacgtcaagcaatgtaacagaactaaaaaattcagtaatattaagagtacgaggagttgtggtttgacaaag aagccgtggtatggtagtggatccttggcttccatgcaggagcctggtcacatgtcggacgaggaggggatcaccattca ccatcctgaattctgttattcaaatgaaaatggatctaagatttgtgcgtcatgcggcaccaggagaacgccattgtgga gggacgcagaggatggcacgccactttgtaatgcctgtggcataaggtttaagaaatacagagtccggtgtagtaaatgc tggcatataccaaagaaggacattaaaacgtaccctaactgccctcactgtggatcaagccttaaaatgtcgtttggaaa gaaatgctcatggtga |
|
Protein
| Protein ID | pfu_aug2.0_79.1_30145.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_79.1_30145.t1 MEMSDLWPIQNIRTSEHLSSLPSIDTTPCQPHDCVTNDRTSQEEQLPIDFSFKKEIKPDLGIFGKPSNDESTAMGNYYQT SVSISAQSGGQQSLNPSCEQLSIKCEQIHSLKWENSSFVQIPQMNDYSSVLKNNRCESSDFSISTQLSQNQRVFDFSSIP YIKREPVTEPSSSYVPRTTMKQVQNSCVHSALQIGGEGGSGTIAVPETEQETSVLRQKLELYPFWIRPFDTSLKINKSMD PSSLNISYSNLIPQEFTITNMIGLPLSCTTRRRPRLLAPKVEDDFVKPDTTILPFPNVKQCNRTKKFSNIKSTRSCGLTK KPWYGSGSLASMQEPGHMSDEEGITIHHPEFCYSNENGSKICASCGTRRTPLWRDAEDGTPLCNACGIRFKKYRVRCSKC WHIPKKDIKTYPNCPHCGSSLKMSFGKKCSW |
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