Gene
| Gene Model ID | pfu_aug2.0_793.1_11188 |
|---|---|
| Locus | scaffold793.1 : 209374 ... 215805 : - |
| To GenomeBrowser | scaffold793.1:209374..215805 |
| Genes list of scaffold | scaffold793.1 |
| Synonym | pfu_aug1.0_18.1_14701 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor sp4 isoform x1 | GO:0005488 GO:0044424 GO:0050789 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_793.1_11188.t1 | 4 | 1 | zf-C2H2 | 640 | 645 | 1.6e-10 | 40.6 | 6.2 | 13000.0 | -3.1 |
| pfu_aug2.0_793.1_11188.t1 | 5 | 1 | zf-H2C2_2 | 640 | 645 | 1.5e-13 | 50.2 | 1.4 | 2900.0 | -1.2 |
| pfu_aug2.0_793.1_11188.t1 | 4 | 2 | zf-C2H2 | 662 | 686 | 1.6e-10 | 40.6 | 1.8e-05 | 0.039 | 14.3 |
| pfu_aug2.0_793.1_11188.t1 | 3 | 1 | zf-C2H2_4 | 662 | 686 | 4.7e-08 | 32.8 | 0.00079 | 1.7 | 9.1 |
| pfu_aug2.0_793.1_11188.t1 | 5 | 2 | zf-H2C2_2 | 667 | 673 | 1.5e-13 | 50.2 | 5.1 | 11000.0 | -3.0 |
| pfu_aug2.0_793.1_11188.t1 | 5 | 3 | zf-H2C2_2 | 678 | 705 | 1.5e-13 | 50.2 | 1.3e-10 | 2.8e-07 | 30.4 |
| pfu_aug2.0_793.1_11188.t1 | 4 | 3 | zf-C2H2 | 692 | 716 | 1.6e-10 | 40.6 | 7.9e-09 | 1.7e-05 | 24.8 |
| pfu_aug2.0_793.1_11188.t1 | 3 | 2 | zf-C2H2_4 | 692 | 716 | 4.7e-08 | 32.8 | 3.8e-07 | 0.0008 | 19.5 |
| pfu_aug2.0_793.1_11188.t1 | 5 | 4 | zf-H2C2_2 | 709 | 731 | 1.5e-13 | 50.2 | 2.5e-11 | 5.3e-08 | 32.7 |
| pfu_aug2.0_793.1_11188.t1 | 4 | 4 | zf-C2H2 | 722 | 744 | 1.6e-10 | 40.6 | 1.2e-07 | 0.00025 | 21.2 |
| pfu_aug2.0_793.1_11188.t1 | 3 | 3 | zf-C2H2_4 | 722 | 744 | 4.7e-08 | 32.8 | 9.6e-06 | 0.02 | 15.1 |
| pfu_aug2.0_793.1_11188.t1 | 5 | 5 | zf-H2C2_2 | 736 | 745 | 1.5e-13 | 50.2 | 0.18 | 380.0 | 1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_793.1_11188.t1 | gi|471379401|ref|XP_004377498.1| | PREDICTED: transcription factor Sp4 [Trichechus manatus latirostris] | 0.0 |
| pfu_aug2.0_793.1_11188.t1 | gi|731253303|ref|XP_010639401.1| | PREDICTED: transcription factor Sp4 isoform X2 [Fukomys damarensis] | 0.0 |
| pfu_aug2.0_793.1_11188.t1 | gi|589951410|ref|XP_006988353.1| | PREDICTED: transcription factor Sp4, partial [Peromyscus maniculatus bairdii] | 0.0 |
| pfu_aug2.0_793.1_11188.t1 | gi|533124317|ref|XP_005377427.1| | PREDICTED: transcription factor Sp4 isoform X3 [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_793.1_11188.t1 | gi|528903216|ref|XP_601311.4| | PREDICTED: transcription factor Sp4 isoform X1, partial [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_793.1_11188.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_793.1_11188.t1 atgacaactgtaacagtaaggaaaaacaatcaagaatatgtcgtcccagctagttcgtcgcaggacgtccaaccgtcccc tctggccctcctagccgcaacttgcagcaaaataggtgcccctcccccaaattcggacggaacagcaaaccagaacggcg aacaaatcagagttgtggggcaggttcagcagggtggggaagtcgtcacgcccagtttaattcagctaccgaatggaact tatgtggacgccagtggaaaacagcaagttgggattcctgtaaccattgggccaaatggacagatcattcaacaagggac accaggtgcccagcagattgttggacccggtgggaacttagcttacaatgtgataccccaatttcagaccattggggttg acagtcaggatgggtctgccatcataataccagcttcaccctcagtggggaatgctgggcagacatttattggaaatcag caagtgtttgccactccgaatgggcagttcgtgcgtgcgcagggaattggaggaaatatccttcctacgggcatgggaat gggcgcggtggcgagtattgggggcaatattgttaacattgggggtaacctagtcagtctgcctggtatacaaaatatgt caaatactgtacgtcccattcaaacgctacaacttcagtcaccggttcaacaaatgatgccgaacattattcaaatacct gtgacgggaccaaacggtcaagctacaatgcaaacggttcaattacaaaatgttgcaatgccgacactgcaagctggaaa cgttcagacaactcaaagtacagaaaattcagcaccgcagatttcgacagccgtatcggctacaactcaatcggtacaac acccacaaacgattcagattcaaccgcatgtgatagaaactacaaaacccgatcagacgacaacgccccaaaaaattatc agcggtaccaatgagaataatgaagcatctactccgaagacactgactattgtggcaaacccaataacaacagaatctgc tgcaacaaatgcagctgtcgcgcagcctcaagttgctaatcaatccatgttgacttcagccattcccaccagtgcttttc agcaaatgccaacgttagtgtacaacgcagctactggtcagctgattcctctgtcacagggaatgatgggaacaaacggt cagctgattacgtcaacgccacaaatagcaacctcaactaccacgtccaccagtacagtggctacaccacaacctgtcaa cattatgccggtgacccctcagcagatcggtttacaagctattggtggacagggatttcagaatattcagtttgctaatg cccaaggtcaaatcattacccagaatccatttctgccgacgttaaacattgcaaacgtcagagcaccaaacgctatacaa acatttcagattcctaatgtacagcccgtacctaatattcagggcgtccaggcagtatccaacatccaaggactgcagac attccaacttacacctaacggacaattgatagcagcgaatcccgcaccaggcacgatacaaaccaatcttggctctttaa cggtaactccacaaggggcaataactctggcaggatctaatattaaccaaacaggaacacagcagcctaccagtccccaa cagtatgccacagtacagaacgttcaaacaggacagcagatagctgtttctcaagccgggggtgtggtgccaagtcaacc tgtagcaggccaaacgttacagatttccactgatcctgccgagggcggaaaatggcaggtggtcactgctaatggtcagc agaccataacggcaatcagtccgactcagacctcaggggaggtcactcctggtagaaggctacgcagagttgcctgtact tgtcctaattgcaaggaattggaaggaaggagtcggacagctggtgaaaatcaaaaacgtctacatatttgtcatgtacc gggctgtaacaaagtttatggcaaaacatcacacctacgggcacatttaagatggcatacgggtgagagaccttttgtgt gtaattggttattctgtggtaaacgatttacgcggtcagatgagctacaaaggcacagacggacgcatacaggtgaaaag aagtttgaatgtccagactgtcacaaaagatttatgagaagtgaccacctcacaaaacataggaaaacacatttaaacag aggcaaaggcaatacgagtttagaatctgtggaatttgttgaagagggagaacagaaatatgacgatactggtattatca ccgtggaaacagaggatggacaacaaacgacagtacgatacgaagtgcaaaatgttattaccgaaccagaccaagtttct gaggaggggtga |
|
Protein
| Protein ID | pfu_aug2.0_793.1_11188.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_793.1_11188.t1 MTTVTVRKNNQEYVVPASSSQDVQPSPLALLAATCSKIGAPPPNSDGTANQNGEQIRVVGQVQQGGEVVTPSLIQLPNGT YVDASGKQQVGIPVTIGPNGQIIQQGTPGAQQIVGPGGNLAYNVIPQFQTIGVDSQDGSAIIIPASPSVGNAGQTFIGNQ QVFATPNGQFVRAQGIGGNILPTGMGMGAVASIGGNIVNIGGNLVSLPGIQNMSNTVRPIQTLQLQSPVQQMMPNIIQIP VTGPNGQATMQTVQLQNVAMPTLQAGNVQTTQSTENSAPQISTAVSATTQSVQHPQTIQIQPHVIETTKPDQTTTPQKII SGTNENNEASTPKTLTIVANPITTESAATNAAVAQPQVANQSMLTSAIPTSAFQQMPTLVYNAATGQLIPLSQGMMGTNG QLITSTPQIATSTTTSTSTVATPQPVNIMPVTPQQIGLQAIGGQGFQNIQFANAQGQIITQNPFLPTLNIANVRAPNAIQ TFQIPNVQPVPNIQGVQAVSNIQGLQTFQLTPNGQLIAANPAPGTIQTNLGSLTVTPQGAITLAGSNINQTGTQQPTSPQ QYATVQNVQTGQQIAVSQAGGVVPSQPVAGQTLQISTDPAEGGKWQVVTANGQQTITAISPTQTSGEVTPGRRLRRVACT CPNCKELEGRSRTAGENQKRLHICHVPGCNKVYGKTSHLRAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHRRTHTGEK KFECPDCHKRFMRSDHLTKHRKTHLNRGKGNTSLESVEFVEEGEQKYDDTGIITVETEDGQQTTVRYEVQNVITEPDQVS EEG |
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