Gene
Gene Model ID | pfu_aug2.0_794.1_14559 |
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Locus | scaffold794.1 : 26796 ... 52632 : + |
To GenomeBrowser | scaffold794.1:26796..52632 |
Genes list of scaffold | scaffold794.1 |
Synonym | pfu_aug1.0_5438.1_16659 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
glutamate receptor 4 isoform x3 | GO:0005216 GO:0016020 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_794.1_14559.t1 | 1 | 1 | ANF_receptor | 4 | 316 | 2.2e-38 | 131.9 | 9.99967e-42 | 3.7e-38 | 131.2 |
pfu_aug2.0_794.1_14559.t1 | 1 | 1 | Lig_chan-Glu_bd | 347 | 400 | 1.3e-12 | 47.5 | 7.6e-16 | 2.8e-12 | 46.4 |
pfu_aug2.0_794.1_14559.t1 | 1 | 1 | SBP_bac_3 | 352 | 694 | 6.1e-25 | 87.7 | 3.3e-28 | 1.2e-24 | 86.8 |
pfu_aug2.0_794.1_14559.t1 | 1 | 1 | Lig_chan | 455 | 730 | 0.0 | 175.4 | 0.0 | 0.0 | 174.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_794.1_14559.t1 | gi|637286383|ref|XP_008106247.1| | PREDICTED: glutamate receptor 4 isoform X5 [Anolis carolinensis] | 0.0 |
pfu_aug2.0_794.1_14559.t1 | gi|327269187|ref|XP_003219376.1| | PREDICTED: glutamate receptor 4 isoform X3 [Anolis carolinensis] | 0.0 |
pfu_aug2.0_794.1_14559.t1 | gi|617592190|ref|XP_007520695.1| | PREDICTED: glutamate receptor 4 isoform X1 [Erinaceus europaeus] | 0.0 |
pfu_aug2.0_794.1_14559.t1 | gi|617592196|ref|XP_007520697.1| | PREDICTED: glutamate receptor 4 isoform X3 [Erinaceus europaeus] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_794.1_14559.t1 |
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Definition | - |
>pfu_aug2.0_794.1_14559.t1 atgtcgattggagtctttcttttcttcggggtcaaggacgccatgacagtggacatagtagagtcatttacaaataaatt ccacattccactggtgtccccttcattaacaaaggtcaagaacgttgcaagcagcttccagattcatatgaagccatcat acacacgggccattatagacatggttaaacactacaaatggaaagttctctattacgtttatgattcgaatgaaggtctt caacgattcgaagaggtgtacagtacgttgcatcgggatccaacattaaatataagtgtggttccagttaagttagagga agtcgattattctcacgagattttgcgaagtttggatgtgatgtattacataggacttaaaacatttaccatcgacttgt cttctttagatgcatatagatcacttatgcgacagatagctgaggttggcatgaatagagagggttatttttacctgttt gcttgtcttgatttctccaagctagattttaccagattcctacacggcggcgttaatgtgacaggctttgatatcgtgga ctcaaacagcgcagacgtcaagagttttcttagaaaatggcggtcggcgaatactaatatatatccctccgcaggggagc ctttgatgtcagaatcagccatgtctgttgatgcattagagacaatagtttcggcactcgatatgatgttacaagaagac agattcatattcaagaagaacttcagacggttaaaaatgttcaacttcaatggcaacataacaacgagagggattccgtg tagtaaagttacaaaccttgatccgcctcctcagccatggcaacatggacaagaaatcctccaagccttaaaatcggtaa tgtttaatggactaacagggcctgtttcatttgacgaaaaaggatacaggaaagattttgaacttctagtatcaactgtc ggtattgatagacctcctcaacaggagccaccgtatctgcaattgagagatccgaagaataaaggcacaaccgcaaattc ccgaatactaaatggtgataaatacgaaggttttatattagactttgcagagaagattgcagaggaattgaacgtgaact tgaaattcagggaagtttccgatgaaaactatggagaggaaatttcgaagggtatttggaatggaatggtcggagaactt aggaatggtactgctgatctagctatcgctccccttacaattacactggctagggaaaaggctattgacttcacaaaacc ttttatggacgtcggaatctcgattatgatcaagaaaccggatatagaaaaacctggtgtattttctttcatgaaaccgt tttctttgagtatatggatgtttatacttttggcatataccgccgttagtattgggctatttctggtgagcagatttagt ccatatgaatggcggaaaattcttagttcggctgggatttcgtatgaaaatgacttttccctgatcaattcgttttggtt ttctacaggagctttaatgttacagggtagcgatgaatgtccaagatctatatcggggcggatcataggaacagtatggt ggtttttcgttctcataatcatatcaacctatacggcgaatcttgcagcatttcttactgtagagaatatggtcgccccc atagaatcggctgatcagctagcagctcaggaccagattaaatatggctgccggaagtccggatcaactgagaaattctt tgaggagaatcaggtgacgacttataggaacatgggtgcctacatgaagaataacccaagtgtaatggtagcaaccacga gggaaggcattgagagggtgcgtaactctaaaggaaaatatgcactcttgatagaatctactatgaacgaatatgaaaac agtagagagccttgtgatactctgaaagtcggcagaaatctcaacgcagaagggtacggtattgcaacgcctactggctc aatatacagagatagacttaatcttgctgtcctgatgctacatgaagatgggacgttgttaagacttaaacggagatggt ggcaggacaagagtcagtgtgcaccggaaggcactaaggagtcttctggtaagccttccttgtcgcttagcaatgtagct ggagtattctacattttaattggtggattagtcattgcagttgtttttggcgcgttccaatttattgttaaacagttaca tttagaaccaaagtacatcaccgcagagcgggatacatcatgtgatcgactgattcgaacaccctcagagcgagaaaatg gagatctcaccgagtgtgcctccacgtctgcagatacctctctcaaagaacttcctcccattggttttgaagcatttaat aatttacagaatcggccgaagatttag |
Protein
Protein ID | pfu_aug2.0_794.1_14559.t1 |
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Definition | - |
>pfu_aug2.0_794.1_14559.t1 MSIGVFLFFGVKDAMTVDIVESFTNKFHIPLVSPSLTKVKNVASSFQIHMKPSYTRAIIDMVKHYKWKVLYYVYDSNEGL QRFEEVYSTLHRDPTLNISVVPVKLEEVDYSHEILRSLDVMYYIGLKTFTIDLSSLDAYRSLMRQIAEVGMNREGYFYLF ACLDFSKLDFTRFLHGGVNVTGFDIVDSNSADVKSFLRKWRSANTNIYPSAGEPLMSESAMSVDALETIVSALDMMLQED RFIFKKNFRRLKMFNFNGNITTRGIPCSKVTNLDPPPQPWQHGQEILQALKSVMFNGLTGPVSFDEKGYRKDFELLVSTV GIDRPPQQEPPYLQLRDPKNKGTTANSRILNGDKYEGFILDFAEKIAEELNVNLKFREVSDENYGEEISKGIWNGMVGEL RNGTADLAIAPLTITLAREKAIDFTKPFMDVGISIMIKKPDIEKPGVFSFMKPFSLSIWMFILLAYTAVSIGLFLVSRFS PYEWRKILSSAGISYENDFSLINSFWFSTGALMLQGSDECPRSISGRIIGTVWWFFVLIIISTYTANLAAFLTVENMVAP IESADQLAAQDQIKYGCRKSGSTEKFFEENQVTTYRNMGAYMKNNPSVMVATTREGIERVRNSKGKYALLIESTMNEYEN SREPCDTLKVGRNLNAEGYGIATPTGSIYRDRLNLAVLMLHEDGTLLRLKRRWWQDKSQCAPEGTKESSGKPSLSLSNVA GVFYILIGGLVIAVVFGAFQFIVKQLHLEPKYITAERDTSCDRLIRTPSERENGDLTECASTSADTSLKELPPIGFEAFN NLQNRPKI |