Gene
| Gene Model ID | pfu_aug2.0_799.1_31168 |
|---|---|
| Locus | scaffold799.1 : 41426 ... 51746 : + |
| To GenomeBrowser | scaffold799.1:41426..51746 |
| Genes list of scaffold | scaffold799.1 |
| Synonym | pfu_aug1.0_83099.1_42080 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_799.1_31168.t1 | 2 | 1 | GST_C_3 | 22 | 98 | 5.6e-08 | 33.1 | 2.7e-10 | 3.1e-07 | 30.8 |
| pfu_aug2.0_799.1_31168.t1 | 2 | 1 | GST_C | 28 | 102 | 4.1e-15 | 55.5 | 7.5e-18 | 8.5e-15 | 54.5 |
| pfu_aug2.0_799.1_31168.t1 | 1 | 1 | GST_C_2 | 32 | 95 | 2.6e-07 | 30.4 | 4.0e-10 | 4.6e-07 | 29.6 |
| pfu_aug2.0_799.1_31168.t1 | 2 | 2 | GST_C_3 | 145 | 161 | 5.6e-08 | 33.1 | 2.0 | 2300.0 | -0.9 |
| pfu_aug2.0_799.1_31168.t1 | 2 | 2 | GST_C | 150 | 150 | 4.1e-15 | 55.5 | 4.1 | 4700.0 | -2.4 |
| pfu_aug2.0_799.1_31168.t1 | 1 | 1 | EF1G | 176 | 281 | 0.0 | 163.7 | 0.0 | 0.0 | 162.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_799.1_31168.t1 | gi|260830645|ref|XP_002610271.1| | hypothetical protein BRAFLDRAFT_115434 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_799.1_31168.t1 | gi|39644730|gb|AAH21974.2| | EEF1G protein, partial [Homo sapiens] | 0.0 |
| pfu_aug2.0_799.1_31168.t1 | gi|189597|gb|AAC18414.1| | pancreatic tumor-related protein [Homo sapiens] | 0.0 |
| pfu_aug2.0_799.1_31168.t1 | gi|557320186|ref|XP_006033236.1| | PREDICTED: elongation factor 1-gamma isoform X1 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_799.1_31168.t1 | gi|564264338|ref|XP_006271018.1| | PREDICTED: elongation factor 1-gamma-like [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_799.1_31168.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_799.1_31168.t1 atgaagtgttacctgcagcctgtacatgggtgtttccttgtcttggtgtcacacagtacaataaacagcccaactcttgg gtcacaaacagagacggagaaagctaaagagcaagtaaagaaagctatgacggtgctgaacaattatctgtcaacgcgaa ctttcctggtcggtgagagaatatcgcaggcagacatcagcgtgtgttgtaacctcctaatgttgtatcagaatgtaatg gatcctggattcagacagccatttaaacacgtcaacagatggtttaccaccctcgttaaccagccacagttccgtaaagt tataggagacttcaaattctgtaccaagatggcagagtttgatggcaaaaaatatgcagaattccacggtcagcaaggag gtgggaagaaagacaaaaaagaaaagaaagagagcaagcccaaacaggctccacagcccaaacaggagaaagcttcaaag aaaaaagaggaagaagaggaggacgatgtaccaaaggagaaggaatccaaggacccatttgcctccatgccaaagggtac atttaacatggatgaattcaagagggaatactccaacaaggataccatcacagaagccctgccttacttctggaaaaact ttgataaggaaaattactctatttggtactgtgaatatctatacaacgacgagctcgcaaaagtttttatgacctgtaat ttagttggaggaatgtttcaacgactagataagttgaggaaaaacgcctttgccagtatgtgcatatttggagaagacgg caataattcaattagtggtatttggatctggaaaggacacgagctagcgttcacggaagttcacactgccatgcacaagg ccaaagcttccaaaagcatgacacttcagtcatacttaaaaaatgtcattgtatttctgtaa |
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Protein
| Protein ID | pfu_aug2.0_799.1_31168.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_799.1_31168.t1 MKCYLQPVHGCFLVLVSHSTINSPTLGSQTETEKAKEQVKKAMTVLNNYLSTRTFLVGERISQADISVCCNLLMLYQNVM DPGFRQPFKHVNRWFTTLVNQPQFRKVIGDFKFCTKMAEFDGKKYAEFHGQQGGGKKDKKEKKESKPKQAPQPKQEKASK KKEEEEEDDVPKEKESKDPFASMPKGTFNMDEFKREYSNKDTITEALPYFWKNFDKENYSIWYCEYLYNDELAKVFMTCN LVGGMFQRLDKLRKNAFASMCIFGEDGNNSISGIWIWKGHELAFTEVHTAMHKAKASKSMTLQSYLKNVIVFL |
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