Gene
| Gene Model ID | pfu_aug2.0_8.1_26616 |
|---|---|
| Locus | scaffold8.1 : 75159 ... 99115 : - |
| To GenomeBrowser | scaffold8.1:75159..99115 |
| Genes list of scaffold | scaffold8.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_8.1_26616.t1 | 4 | 1 | Ldl_recept_a | 26 | 40 | 1.5e-09 | 37.5 | 0.78 | 2300.0 | -1.5 |
| pfu_aug2.0_8.1_26616.t1 | 4 | 2 | Ldl_recept_a | 50 | 86 | 1.5e-09 | 37.5 | 5.0e-12 | 1.5e-08 | 34.4 |
| pfu_aug2.0_8.1_26616.t1 | 4 | 3 | Ldl_recept_a | 102 | 120 | 1.5e-09 | 37.5 | 1.8e-06 | 0.0052 | 16.6 |
| pfu_aug2.0_8.1_26616.t1 | 2 | 1 | Kringle | 125 | 193 | 2.3e-24 | 85.2 | 5.4e-17 | 1.6e-13 | 50.5 |
| pfu_aug2.0_8.1_26616.t1 | 4 | 4 | Ldl_recept_a | 225 | 240 | 1.5e-09 | 37.5 | 1.3 | 3900.0 | -2.2 |
| pfu_aug2.0_8.1_26616.t1 | 2 | 2 | Kringle | 280 | 346 | 2.3e-24 | 85.2 | 9.9e-14 | 2.9e-10 | 40.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_8.1_26616.t1 | gi|556982802|ref|XP_005997622.1| | PREDICTED: plasminogen-like [Latimeria chalumnae] | 3.0e-20 |
Transcript
| Transcript ID | pfu_aug2.0_8.1_26616.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8.1_26616.t1 atggacgaatgcacgcgcacctgccctgcatctcttctcaattggaaccatttttgtgaagaagatacagtatcagagaa aacttgcactacatctctgcacagtggatgcattcaaaagtccggattcattaaagatccattacactcatgtccgtctg cctatttcaactgtcctgggaccagtaggtgtgttgccaaaatattagtatgcgatggagcaaatgaatgtgccaatggc gaggacgaagtcaattgtgactcccataactgtacgaaggctatgatagacctaggtcttacatcctgggtatgtgataa gacggtagattgcttagacggaggggatgaactatattgcaattgcaaagttcctggacaacattacgagggccatatta atgtaacagtgcaaggatatgaatgtcagagatgggactcgcagacacccaactcacacaattatggggaagatggtaag gactcagaaaattactgccgcgattacgattgggattctgaatggtgctacacaacggatcattcaacgagatgggactc ttgcaacattcctaaatgttcagcatatcctacccatcctgctacgtattccgttacatttgtggacatgataactttca cattctttggcaaattgaggatcactgacgaggactgtcccccgggtacatataagcccaatgccactacctgtgtacca tgtagtccgaaaacctacacaaatcagtggaattcaagaacatgcactccatgtttgcccgggcttaatcaagatgaaaa cgacagaaccacctgtaaagattgtagaatgggtaatgagccatacgaaggctacatcaataaaacatggtccgggttca catgtcagcgatgggattcacagacacctcattcacacagctacggagaaatggggaaagattccgagaattactgccgg acatttggtagaatatatccatggtgcatcacaacaaatccttacgtaaaatatgatgattgtggtgtacctaattgtta atgcaaagaagagatctttaaaaaaaaaggatggaaaaacaacacttcacaaacatggattttagtactacagagttgga cattgtgttgctgtttgattttctga |
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Protein
| Protein ID | pfu_aug2.0_8.1_26616.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8.1_26616.t1 MDECTRTCPASLLNWNHFCEEDTVSEKTCTTSLHSGCIQKSGFIKDPLHSCPSAYFNCPGTSRCVAKILVCDGANECANG EDEVNCDSHNCTKAMIDLGLTSWVCDKTVDCLDGGDELYCNCKVPGQHYEGHINVTVQGYECQRWDSQTPNSHNYGEDGK DSENYCRDYDWDSEWCYTTDHSTRWDSCNIPKCSAYPTHPATYSVTFVDMITFTFFGKLRITDEDCPPGTYKPNATTCVP CSPKTYTNQWNSRTCTPCLPGLNQDENDRTTCKDCRMGNEPYEGYINKTWSGFTCQRWDSQTPHSHSYGEMGKDSENYCR TFGRIYPWCITTNPYVKYDDCGVPNCXCKEEIFKKKGWKNNTSQTWILVLQSWTLCCCLIF |
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