Gene
| Gene Model ID | pfu_aug2.0_8.1_26630 |
|---|---|
| Locus | scaffold8.1 : 522504 ... 543387 : - |
| To GenomeBrowser | scaffold8.1:522504..543387 |
| Genes list of scaffold | scaffold8.1 |
| Synonym | pfu_aug1.0_575.1_29342 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_8.1_26630.t1 | 2 | 1 | Myb_DNA-binding | 131 | 138 | 5.7e-09 | 35.9 | 1.6 | 7700.0 | -3.0 |
| pfu_aug2.0_8.1_26630.t1 | 2 | 1 | Myb_DNA-bind_6 | 131 | 139 | 1.5e-07 | 31.4 | 3.0 | 15000.0 | -4.0 |
| pfu_aug2.0_8.1_26630.t1 | 2 | 2 | Myb_DNA-binding | 322 | 367 | 5.7e-09 | 35.9 | 1.2e-12 | 6.1e-09 | 35.8 |
| pfu_aug2.0_8.1_26630.t1 | 2 | 2 | Myb_DNA-bind_6 | 323 | 372 | 1.5e-07 | 31.4 | 3.0e-11 | 1.5e-07 | 31.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_8.1_26630.t1 | gi|524913332|ref|XP_005111497.1| | PREDICTED: dnaJ homolog subfamily C member 2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_8.1_26630.t1 | gi|676468098|ref|XP_009058099.1| | hypothetical protein LOTGIDRAFT_93548, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_8.1_26630.t1 | gi|449511476|ref|XP_002200333.2| | 0.0 | |
| pfu_aug2.0_8.1_26630.t1 | gi|594051155|ref|XP_006049915.1| | PREDICTED: dnaJ homolog subfamily C member 2 isoform X4 [Bubalus bubalis] | 0.0 |
| pfu_aug2.0_8.1_26630.t1 | gi|545213591|ref|XP_005609104.1| | PREDICTED: dnaJ homolog subfamily C member 2 isoform X3 [Equus caballus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_8.1_26630.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8.1_26630.t1 atgtcatatgatagcgtagatccactgtttgatgaagacattccctcaacaagtgatataaccaaatcaaacttctacac catatttacatcggcttttgacagaaatgcaaggtggtctaagaaaaagagagtaccatctctaggaacagatagtacat ccatagaagaagttaataaattctactcattttgtcgtgaggaaagaagatggatagaaaaacaaaataaagcagccaga cagaaaagaaagaaggaagaaatgactaggataagatctcttgttgacaatgcatattcctgtgatcctagaatacaaag atttaaagaagaagaaaaagagaaaaaggaagcacaaaaaagggcaaaaaaggaagctgcaagacagaaggccgaagaag aggaaaagctgaaaagggaagcagaagaagaagaaaggaagaaaagagagaaagaagaagaggaagccaaagctcaggca gctgctgctaagaaggaaaaggaagcacagaagaaaattatgaaaaaggagaagaaaacttttaggaatctcattaaatc tgaagatgacagagtgaaaaatatggctgacacagacagactggcagagtggatgtcattactcaagttacagacaataa atgaagttcttacatcaggagacaaggaaaaatcaaagtcagcatttctgtcagaggttgatgacctaaacaagcacata gaggaagagaagaggaaacagttagaggccttacagaaacagtcaggaggagataactctggtggctcacggaaagcctg gaatctggcactaaagcatgatgcagataaaaatgcctttgagaattttgagaaaaaagtgaaatcaacagatgttcaag ctaaaccaaaggaaggagttacaagtgaaagatttgaaagtataggcgaacagttgataagggagacggggtcaaatcca gccccttggtcagcggatgaacaaaagttattggaacaagctttaaaaacgtacggagccagtactcctgaaagatggga gaaaatatcagaatgtataccctccaggagtaaaaaggactgtatgaaaagatataaagaactttgcgaaatggttcgcg cgaagaaagccgcccaggaagccgctgcgaaaaagaaataa |
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Protein
| Protein ID | pfu_aug2.0_8.1_26630.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8.1_26630.t1 MSYDSVDPLFDEDIPSTSDITKSNFYTIFTSAFDRNARWSKKKRVPSLGTDSTSIEEVNKFYSFCREERRWIEKQNKAAR QKRKKEEMTRIRSLVDNAYSCDPRIQRFKEEEKEKKEAQKRAKKEAARQKAEEEEKLKREAEEEERKKREKEEEEAKAQA AAAKKEKEAQKKIMKKEKKTFRNLIKSEDDRVKNMADTDRLAEWMSLLKLQTINEVLTSGDKEKSKSAFLSEVDDLNKHI EEEKRKQLEALQKQSGGDNSGGSRKAWNLALKHDADKNAFENFEKKVKSTDVQAKPKEGVTSERFESIGEQLIRETGSNP APWSADEQKLLEQALKTYGASTPERWEKISECIPSRSKKDCMKRYKELCEMVRAKKAAQEAAAKKK |
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