Gene
Gene Model ID | pfu_aug2.0_8.1_26632 |
---|---|
Locus | scaffold8.1 : 556304 ... 558067 : - |
To GenomeBrowser | scaffold8.1:556304..558067 |
Genes list of scaffold | scaffold8.1 |
Synonym | pfu_aug1.0_19663.1_61932 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_8.1_26632.t1 | 2 | 1 | PAX | 1 | 118 | 0.0 | 160.5 | 0.0 | 0.0 | 160.5 |
pfu_aug2.0_8.1_26632.t1 | 1 | 1 | HTH_23 | 15 | 54 | 2.3e-06 | 27.0 | 3.3e-09 | 6.2e-06 | 25.6 |
pfu_aug2.0_8.1_26632.t1 | 2 | 2 | PAX | 136 | 160 | 0.0 | 160.5 | 2.4 | 4500.0 | -2.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_8.1_26632.t1 | gi|602654772|ref|XP_007433193.1| | PREDICTED: paired box protein Pax-5-like, partial [Python bivittatus] | 0.0 |
pfu_aug2.0_8.1_26632.t1 | gi|694635733|ref|XP_009476714.1| | PREDICTED: paired box protein Pax-5, partial [Pelecanus crispus] | 0.0 |
pfu_aug2.0_8.1_26632.t1 | gi|701298874|ref|XP_010009799.1| | PREDICTED: paired box protein Pax-5, partial [Nestor notabilis] | 0.0 |
pfu_aug2.0_8.1_26632.t1 | gi|701330416|ref|XP_009977652.1| | PREDICTED: paired box protein Pax-5, partial [Tauraco erythrolophus] | 0.0 |
pfu_aug2.0_8.1_26632.t1 | gi|533136210|ref|XP_005382952.1| | PREDICTED: paired box protein Pax-5 isoform X7 [Chinchilla lanigera] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_8.1_26632.t1 |
---|---|
Definition | - |
>pfu_aug2.0_8.1_26632.t1 atgggtggcacatacataaatggaaaggctctgccagattttatgcgtcaaaggatcataattctatctaaccaaggact caaagcagcagagatttcccgccaattacgggtgtcacatggctgcgtttcaaagctcctccgacgatacaagctcactg gttccattaaagccaagagccaaggaggatccaaacccaccgtggccattccatcagtagttgagactatccatagatac aaggaagaaaatccaacaatcttcgcttgggaaataagagaaaaactgctgttagaccgtgtgtgtaacatcgataacgt accaagtataagctccatcaataggatagtcagaatggaatcttcaagaccaaacaggaggtcgtctttagaagatacat ctatctcgtcgcctgaatctgtaagtcctaccacggaaacaaagaaatcacccacttccttcagtattcgtgatattctg ggggacacgatcgataacgacgaaaaatgccgagcagaatccgtgaaacgaaggctagaagatccaactgatgataacag aaaattcaaaatttccaaaactgatcaaagaacatttgcaaataccagagaagaatgcagagaagacagatatagactta atgactctaagccgattacctattcgcaagatcataacattgcagcaaatcattacttaggactttactctcaatcgttg atgttcccctcatacacgtatccctatttaccgctgacgtcggcgtataactacggtaccggactcccgtcatcatacgc cgtgtctgccctccctgcgtggactccagcattatctacacactatctgacactaggactcggcgaaagtggcaagctga cctcaacgtaccaaaatgacgaacaaagcgatgatatgtacattccttacaaatctgagaacatggtcaagaaggaatta tttccatag |
Protein
Protein ID | pfu_aug2.0_8.1_26632.t1 |
---|---|
Definition | - |
>pfu_aug2.0_8.1_26632.t1 MGGTYINGKALPDFMRQRIIILSNQGLKAAEISRQLRVSHGCVSKLLRRYKLTGSIKAKSQGGSKPTVAIPSVVETIHRY KEENPTIFAWEIREKLLLDRVCNIDNVPSISSINRIVRMESSRPNRRSSLEDTSISSPESVSPTTETKKSPTSFSIRDIL GDTIDNDEKCRAESVKRRLEDPTDDNRKFKISKTDQRTFANTREECREDRYRLNDSKPITYSQDHNIAANHYLGLYSQSL MFPSYTYPYLPLTSAYNYGTGLPSSYAVSALPAWTPALSTHYLTLGLGESGKLTSTYQNDEQSDDMYIPYKSENMVKKEL FP |