Gene
| Gene Model ID | pfu_aug2.0_8.1_26639 |
|---|---|
| Locus | scaffold8.1 : 720201 ... 726075 : + |
| To GenomeBrowser | scaffold8.1:720201..726075 |
| Genes list of scaffold | scaffold8.1 |
| Synonym | pfu_aug1.0_12197.1_46471 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_8.1_26639.t1 | 3 | 1 | GTP_EFTU_D3 | 8 | 40 | 2.1e-13 | 50.2 | 1.5 | 5600.0 | -2.5 |
| pfu_aug2.0_8.1_26639.t1 | 1 | 1 | GTP_EFTU | 56 | 214 | 7.69313e-43 | 146.1 | 0.0 | 1.19951e-42 | 145.4 |
| pfu_aug2.0_8.1_26639.t1 | 3 | 2 | GTP_EFTU_D3 | 237 | 247 | 2.1e-13 | 50.2 | 0.37 | 1400.0 | -0.5 |
| pfu_aug2.0_8.1_26639.t1 | 1 | 1 | GTP_EFTU_D2 | 239 | 308 | 3.3e-14 | 52.7 | 1.8e-17 | 6.7e-14 | 51.7 |
| pfu_aug2.0_8.1_26639.t1 | 3 | 3 | GTP_EFTU_D3 | 313 | 404 | 2.1e-13 | 50.2 | 5.9e-16 | 2.2e-12 | 46.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_8.1_26639.t1 | gi|524915789|ref|XP_005112685.1| | PREDICTED: elongation factor Tu, mitochondrial-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_8.1_26639.t1 | gi|676448901|ref|XP_009051880.1| | hypothetical protein LOTGIDRAFT_178160 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_8.1_26639.t1 | gi|675851854|ref|XP_009011487.1| | hypothetical protein HELRODRAFT_186271 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_8.1_26639.t1 | gi|241684485|ref|XP_002401272.1| | translation elongation factor, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_8.1_26639.t1 | gi|751450299|ref|XP_011179421.1| | PREDICTED: elongation factor Tu, mitochondrial [Bactrocera cucurbitae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_8.1_26639.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8.1_26639.t1 atggaaatccctgaaatagttcaatttgtcccagggtattcaaccacagtgcaaatagcctggggaaccgaggacggtcc atcaaaaaagttaatcatggcaatagactctagtggtgaagcacagtcatctagactcttaagccgacccgaaaaaaacc aagcaacattcaaaagatatgatgagattgaccatgcaccggaggagaagaagcgtggtataacaatcaacgctgccatg gtggaatatgaaacggacaagaggcattatggtcatacagattgtcctggacatttggattacatcaaaaacatgattat tgggacaacacagatggatggctgtatactagtcattgctgctacagatggatgcatgccgcaaaccaaagaacatttgc tactcgcaagacaaattggtataaaaaatattgttgttttcgtgaacaaagcagatgcgtgtgacgaggaaatgattgaa cttgtattaatggagattcaagaattgttagaactgaatggttacagctcagaggaaacaccaatcataattggatccgc cctgaatgcattgaatggtgagaacccagatcttggtgagaaaaagatcagagaattattggatgctgtagacagccatt ttgcattaccccagagagatttggagaagcctttccaaatgcccttggaacatctttacgccattactggtcgtggcact gtagcaacaggaaaaatagagcatggtgtcatcaagaagggagatgtatgcgaaattgtcgggcatgacaaaattcacaa gtcagctattaacggaatcgaaatgttccgaaaacaactagaccagggacaagcaggagatacagtaggtgttttactga aaggctttaaaaaggatgaactgagacgtggacacatcatatgtaaacccggcacactgaagattcataaccagtttgag ggccaactatttttggtttcggaaaaggatggtgggagatcaaaaccattacttaacaagcaccaggtcagtatcttcag taaaacgtggaatatttcagcttacacagaaatgaaaggaaaagaaatgatcatgccaggagaggaggctaccctgaact tcaaaatgtataggttgatgggaatgcatgaaggccaacgttttacagtgagagatggttcaaaaacaatcggatatggt gtctgtacaaaatgtctaccaaactttaatttagaagagtatgagaagtcacgcaaagaggagaaaaaacagaaaaaaaa ggcgaaagaggcggagggtcactaa |
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Protein
| Protein ID | pfu_aug2.0_8.1_26639.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8.1_26639.t1 MEIPEIVQFVPGYSTTVQIAWGTEDGPSKKLIMAIDSSGEAQSSRLLSRPEKNQATFKRYDEIDHAPEEKKRGITINAAM VEYETDKRHYGHTDCPGHLDYIKNMIIGTTQMDGCILVIAATDGCMPQTKEHLLLARQIGIKNIVVFVNKADACDEEMIE LVLMEIQELLELNGYSSEETPIIIGSALNALNGENPDLGEKKIRELLDAVDSHFALPQRDLEKPFQMPLEHLYAITGRGT VATGKIEHGVIKKGDVCEIVGHDKIHKSAINGIEMFRKQLDQGQAGDTVGVLLKGFKKDELRRGHIICKPGTLKIHNQFE GQLFLVSEKDGGRSKPLLNKHQVSIFSKTWNISAYTEMKGKEMIMPGEEATLNFKMYRLMGMHEGQRFTVRDGSKTIGYG VCTKCLPNFNLEEYEKSRKEEKKQKKKAKEAEGH |
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