Gene
| Gene Model ID | pfu_aug2.0_80.1_00187 |
|---|---|
| Locus | scaffold80.1 : 100565 ... 111732 : - |
| To GenomeBrowser | scaffold80.1:100565..111732 |
| Genes list of scaffold | scaffold80.1 |
| Synonym | pfu_aug1.0_4359.1_37853 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| coatomer subunit gamma-2 | GO:0005198 GO:0005829 GO:0006886 GO:0006890 GO:0006891 GO:0030126 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_80.1_00187.t1 | 2 | 1 | Adaptin_N | 23 | 130 | 0.0 | 360.7 | 4.2e-26 | 8.9e-23 | 80.3 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 1 | HEAT_2 | 60 | 126 | 6.6e-13 | 48.7 | 0.13 | 280.0 | 1.8 |
| pfu_aug2.0_80.1_00187.t1 | 2 | 2 | Adaptin_N | 132 | 476 | 0.0 | 360.7 | 0.0 | 0.0 | 279.8 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 1 | HEAT | 191 | 215 | 3.7e-06 | 26.5 | 0.24 | 500.0 | 1.2 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 2 | HEAT_2 | 196 | 262 | 6.6e-13 | 48.7 | 7.5e-07 | 0.0016 | 18.6 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 2 | HEAT | 227 | 253 | 3.7e-06 | 26.5 | 0.00071 | 1.5 | 9.0 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 3 | HEAT_2 | 267 | 303 | 6.6e-13 | 48.7 | 0.0033 | 7.1 | 6.9 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 3 | HEAT | 268 | 286 | 3.7e-06 | 26.5 | 4.3 | 9000.0 | -2.7 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 4 | HEAT_2 | 308 | 388 | 6.6e-13 | 48.7 | 0.66 | 1400.0 | -0.4 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 5 | HEAT_2 | 410 | 466 | 6.6e-13 | 48.7 | 1.3e-05 | 0.027 | 14.7 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 4 | HEAT | 424 | 440 | 3.7e-06 | 26.5 | 0.0043 | 9.0 | 6.6 |
| pfu_aug2.0_80.1_00187.t1 | 5 | 5 | HEAT | 450 | 468 | 3.7e-06 | 26.5 | 0.0033 | 6.9 | 7.0 |
| pfu_aug2.0_80.1_00187.t1 | 1 | 1 | COP-gamma_platf | 550 | 699 | 0.0 | 208.8 | 0.0 | 0.0 | 207.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_80.1_00187.t1 | gi|676470518|ref|XP_009058878.1| | hypothetical protein LOTGIDRAFT_191967 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_80.1_00187.t1 | gi|390343290|ref|XP_784737.3| | PREDICTED: coatomer subunit gamma-2 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_80.1_00187.t1 | gi|296531454|ref|NP_001171865.1| | coatomer subunit gamma-2 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_80.1_00187.t1 | gi|675675486|ref|XP_009001311.1| | PREDICTED: LOW QUALITY PROTEIN: coatomer subunit gamma-2 [Callithrix jacchus] | 0.0 |
| pfu_aug2.0_80.1_00187.t1 | gi|345324772|ref|XP_003430857.1| | PREDICTED: coatomer subunit gamma-1 [Ornithorhynchus anatinus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_80.1_00187.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_80.1_00187.t1 atgatgagaagagataaaaaagaggaggaggatggtggagggaatccattccacaatctggagaagagctctgtattaca ggaggccaggacatttaatgagacgcctatcaatccaaggaaatgcagtcacattcttacaaaagttctttaccttatca accagggagaacagattggcaccacagaggcaacagagactttctttgccatgaccaagttattccaggcaaaagatccc atactaagaagacttgtctatttggggataaaggaaatgtctaaaattgcacaagatgtcatcattgttactagcagttt aatgaaggacatgacaggaaaagaggatcagtttagaggacctgccatcagagctttgtgttccattacagattaccatg ccttgggattactgtaccatataaggaagaatgacaaactcgccgtgactaaacttgttagtaaattcagcaaacactca ctaaagtcaccatacgcttactgcctactgattcgtattgcaagcaagctgatggaagaggaggatgcaggatcagaaag tcctatgtttgatttcattgagagctgcctgcgtcacaagagtgagatcgttatatatgaagcagctcacgccatcgtta acctgaagaacacgacagccaaggagctagcctctgccgtgcctgtgttacagctgttctgtagttcacctaaacccaca ctgagatttgctgcaataaggactctcaacaaggtggccatgaagcacccagcagccgttacggcctgtaacttggagtt ggaaaatttaatcacagactccaatcgtagcattgccactcttgctattactactttattgaagactggtaatgagagca gtgtagacagactgatgaagcagatctcaagttttatgaatgaaatctctgatgaattcaagatagtggtagtccaggct atacagtctctgtgcctaaaattccccaggaaacacaatgttctgatgaactttttggccggaatgttgagagatgaggg tggttttgattacaagaaggcaatctgtgacagcatcataaccattatagaggaaaatccggaagctaaggaagcaggac ttgctcacctgtgtgagtttatcgaggactgtgaacataccgtgttagctacgaggatcttacatctccttggcagggag ggaccaaggacccctaccccctccaagtacatccgcttcatctataacagagtgatcctggaacaagcacctgtcagagc tgctgctgtgactgctcttgccaagtttggtgctcactgtgaggagcttttaccaagctgtgtggtgctccttgagagat gtttactggacactgacgatgaagtacgtgacagagctacgttctacgttaatgttcttaaacagacacagaaggctctg aactctacctacattctcaatggattacaagtatctgtcgtaggattggagaggtctttacaccattatactctggaacc atcggcagaaccgtttgacatgaagagtgtaccactagaaacacaaccaatggttgaacagaaaacagtgcgagagccag gagagacagtgtcggccaaaccatcagagaaagtggcagcatccagacaggatatatacgcagaacaactgggagccata cccgagtttgctaacctgggatctctgttcaagtcctctagtctgccgatagaactgacagaatcagagacggagtatgt cgtacagtgtgtcaaacacacattcagtcgctatatggtactccagtttgactgtaccaacaccctgaatgaccagatct tggagaacgtgacagtgcagatggatggagcggagggatttgacgtgttgaagatgataccctgccccagtctgccgtac aataaaccagggactacgtacacactggtcagactacctgaagatcctcaactagtgacgggaactttcacttgcgttct gaagtttatcgtaaaggactgtgatcctaacacaggagagcccgatgaggagggttacgaagacgaatatgtgctggagg acctggaagtcaccgttgctgatcatgtacagagagttatgaaaccaaacttcagtgcatcatgggaagaagtggggcca gaaaacgaacttgaggacacatacgcactgtctaccatgaagtctttagaagaggcagtcaaacagatcatacagtttat gggcatgcagccttgcgaaagatcagataaaattccagaaggcaaaagttcccattcattgtttctggccggggtttaca ggggaggtcatgatgcattagtaagagctaaaatggcaatgacagaaggaggagttacgatgcagcttactgtacgatca acagatcccaatgtttctgaagtattagctacagctataggataa |
|
Protein
| Protein ID | pfu_aug2.0_80.1_00187.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_80.1_00187.t1 MMRRDKKEEEDGGGNPFHNLEKSSVLQEARTFNETPINPRKCSHILTKVLYLINQGEQIGTTEATETFFAMTKLFQAKDP ILRRLVYLGIKEMSKIAQDVIIVTSSLMKDMTGKEDQFRGPAIRALCSITDYHALGLLYHIRKNDKLAVTKLVSKFSKHS LKSPYAYCLLIRIASKLMEEEDAGSESPMFDFIESCLRHKSEIVIYEAAHAIVNLKNTTAKELASAVPVLQLFCSSPKPT LRFAAIRTLNKVAMKHPAAVTACNLELENLITDSNRSIATLAITTLLKTGNESSVDRLMKQISSFMNEISDEFKIVVVQA IQSLCLKFPRKHNVLMNFLAGMLRDEGGFDYKKAICDSIITIIEENPEAKEAGLAHLCEFIEDCEHTVLATRILHLLGRE GPRTPTPSKYIRFIYNRVILEQAPVRAAAVTALAKFGAHCEELLPSCVVLLERCLLDTDDEVRDRATFYVNVLKQTQKAL NSTYILNGLQVSVVGLERSLHHYTLEPSAEPFDMKSVPLETQPMVEQKTVREPGETVSAKPSEKVAASRQDIYAEQLGAI PEFANLGSLFKSSSLPIELTESETEYVVQCVKHTFSRYMVLQFDCTNTLNDQILENVTVQMDGAEGFDVLKMIPCPSLPY NKPGTTYTLVRLPEDPQLVTGTFTCVLKFIVKDCDPNTGEPDEEGYEDEYVLEDLEVTVADHVQRVMKPNFSASWEEVGP ENELEDTYALSTMKSLEEAVKQIIQFMGMQPCERSDKIPEGKSSHSLFLAGVYRGGHDALVRAKMAMTEGGVTMQLTVRS TDPNVSEVLATAIG |
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