Gene
| Gene Model ID | pfu_aug2.0_80.1_00192 |
|---|---|
| Locus | scaffold80.1 : 196835 ... 220112 : - |
| To GenomeBrowser | scaffold80.1:196835..220112 |
| Genes list of scaffold | scaffold80.1 |
| Synonym | pfu_aug1.0_26191.1_47772 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| prolyl 4-hydroxylase subunit alpha-1 isoform x2 | GO:0005783 GO:0016706 GO:0019511 GO:0044710 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_80.1_00192.t1 | 1 | 1 | P4Ha_N | 38 | 133 | 8.5e-24 | 83.8 | 7.1e-27 | 2.1e-23 | 82.6 |
| pfu_aug2.0_80.1_00192.t1 | 2 | 1 | 2OG-FeII_Oxy | 467 | 487 | 3.6e-11 | 43.2 | 0.0012 | 3.6 | 7.9 |
| pfu_aug2.0_80.1_00192.t1 | 2 | 2 | 2OG-FeII_Oxy | 489 | 591 | 3.6e-11 | 43.2 | 1.1e-11 | 3.2e-08 | 33.7 |
| pfu_aug2.0_80.1_00192.t1 | 1 | 1 | 2OG-FeII_Oxy_3 | 489 | 586 | 1.7e-07 | 31.6 | 1.6e-08 | 4.7e-05 | 23.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_80.1_00192.t1 | gi|524887465|ref|XP_005100318.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_80.1_00192.t1 | gi|676488141|ref|XP_009064523.1| | hypothetical protein LOTGIDRAFT_196347 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_80.1_00192.t1 | gi|697432649|ref|XP_009673701.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_80.1_00192.t1 | gi|697432645|ref|XP_009673692.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X1 [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_80.1_00192.t1 | gi|242018356|ref|XP_002429643.1| | Prolyl 4-hydroxylase alpha-1 subunit precursor, putative [Pediculus humanus corporis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_80.1_00192.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_80.1_00192.t1 atggaacgcgccgatccagcgttccaggcggacaatgttacgatatcccatcagtgctggggtgtgttccatttgcagta tcgatccggttgttccggttgtatctgagtagcaaacgaattaaatgttcacagtgaggaagtactgaaaagaaaggaga attacctacacaatcctgtgaatgcttatctctacatgaaaaagtttacaatagactgggataaagacatagctccgtta tttcagagggatgctgaaacagaggtgtataaaaagttgaaggagatcaaagagtacctccctacatacgaggatttaaa cggggcggtggccgctctcctccgattacaagacacgtacaagctgaacactgacgatctggccagaggcattgtgggaa aatctcagtccagttctatgacagcgatagattgttttgagctgggtaagataagttacgaggaggaggactacattcat accagccaatggatggagaaggcactgtcgttgcttaacgaggagaaaaatcacaccgtgcaaaaaaaggaactcctgga ctatctagccttctctgtattcaagactgtgattgaccccttgtgtatcgtgtcttcgaagcctgtgactccctgtataa ttacatatactgagtatgttttaatggacttcacagcggccgattgttttgagattgggcggcaggcttacactgacaaa gatttcaaacactgtacaatgtggatggaaaaatcccttgacttggaaaaaggggagggaaacaaaacgatagaaagaat gtatgtgcttgattatctggcttattcctcaatgatgcaaggtgatgttcgaagggcactcattcttacagatgaattat taaccattgcaccctatcatacaagggcacaaaataatcgtcgttattatgagagaatcctgaaggagcatgatgaagac agcaaagtaagtgaagaaggggtcgttgacgacagtcaggagacgcattacagacagtcagaggaatttcagacttatga atcgttatgtagaggagaggatacaaaagtaaataaagataagcatcgcctggtttgccgttatcacaataacaatcatc cgtcgttactgatacaacccgttaaacaagaggagatatttttagacccatggattgtcatgtactacgatgttatgtct gattcagaaataaaagttattaaagaacttgctacaccaaaattacagagagctacgatacagaatcctgtaacgtctgc actagagacagctcattatagaattagtaagagtgcttggttaaaagatggcgaccattttgttgtacatagagtaaata acagaatacaggctgtgacgggattgaccatgaaaacagctgaagatttacagatagcaaactatggtttaggaggccaa tatgaacctcattttgattttgccaggatagcaaactatggtttaggaggccaatatgaacctcattttgattttgccag gaaagaagaaaaaaatgccttcaagagtttaggaacaggaaacagaatagctacatggttaacttacatgtctgatgtag aagctggtggcgctacagtatttccctatattggtgtcaaattatttcccaaaaagggagcagcagcattctggtataat ctatacagaaacggtgacggcatttataacacacggcatgcggcatgtccagttttagtggggcataagtgggtttccaa taagtggattcatgagcgaggacaggaattccgaaggacatgtagccttaataagaaggaataa |
|
Protein
| Protein ID | pfu_aug2.0_80.1_00192.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_80.1_00192.t1 MERADPAFQADNVTISHQCWGVFHLQYRSGCSGCIXVANELNVHSEEVLKRKENYLHNPVNAYLYMKKFTIDWDKDIAPL FQRDAETEVYKKLKEIKEYLPTYEDLNGAVAALLRLQDTYKLNTDDLARGIVGKSQSSSMTAIDCFELGKISYEEEDYIH TSQWMEKALSLLNEEKNHTVQKKELLDYLAFSVFKTVIDPLCIVSSKPVTPCIITYTEYVLMDFTAADCFEIGRQAYTDK DFKHCTMWMEKSLDLEKGEGNKTIERMYVLDYLAYSSMMQGDVRRALILTDELLTIAPYHTRAQNNRRYYERILKEHDED SKVSEEGVVDDSQETHYRQSEEFQTYESLCRGEDTKVNKDKHRLVCRYHNNNHPSLLIQPVKQEEIFLDPWIVMYYDVMS DSEIKVIKELATPKLQRATIQNPVTSALETAHYRISKSAWLKDGDHFVVHRVNNRIQAVTGLTMKTAEDLQIANYGLGGQ YEPHFDFARIANYGLGGQYEPHFDFARKEEKNAFKSLGTGNRIATWLTYMSDVEAGGATVFPYIGVKLFPKKGAAAFWYN LYRNGDGIYNTRHAACPVLVGHKWVSNKWIHERGQEFRRTCSLNKKE |
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