Gene
| Gene Model ID | pfu_aug2.0_800.1_01144 |
|---|---|
| Locus | scaffold800.1 : 108536 ... 113357 : + |
| To GenomeBrowser | scaffold800.1:108536..113357 |
| Genes list of scaffold | scaffold800.1 |
| Synonym | pfu_aug1.0_802.1_00500 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor sox-2 | GO:0005634 GO:0007423 GO:0009790 GO:0009887 GO:0009888 GO:0009966 GO:0030900 GO:0043565 GO:0045165 GO:0045665 GO:0045944 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_800.1_01144.t1 | 5 | 1 | SOXp | 39 | 56 | 9.1e-12 | 45.4 | 0.76 | 3700.0 | -1.5 |
| pfu_aug2.0_800.1_01144.t1 | 5 | 2 | SOXp | 72 | 98 | 9.1e-12 | 45.4 | 0.82 | 4000.0 | -1.6 |
| pfu_aug2.0_800.1_01144.t1 | 1 | 1 | HMG_box_2 | 77 | 145 | 1.2e-11 | 44.7 | 7.5e-15 | 3.7e-11 | 43.2 |
| pfu_aug2.0_800.1_01144.t1 | 1 | 1 | HMG_box | 78 | 146 | 5.6e-27 | 93.7 | 2.9e-30 | 1.4e-26 | 92.4 |
| pfu_aug2.0_800.1_01144.t1 | 5 | 3 | SOXp | 147 | 204 | 9.1e-12 | 45.4 | 1.8e-15 | 9.1e-12 | 45.4 |
| pfu_aug2.0_800.1_01144.t1 | 5 | 4 | SOXp | 209 | 235 | 9.1e-12 | 45.4 | 1.0 | 4900.0 | -1.8 |
| pfu_aug2.0_800.1_01144.t1 | 5 | 5 | SOXp | 299 | 314 | 9.1e-12 | 45.4 | 0.32 | 1600.0 | -0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_800.1_01144.t1 | gi|676425863|ref|XP_009044439.1| | hypothetical protein LOTGIDRAFT_184905, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_800.1_01144.t1 | gi|524873870|ref|XP_005093677.1| | PREDICTED: transcription factor Sox-2-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_800.1_01144.t1 | gi|259013336|ref|NP_001158377.1| | SRY (sex determining region Y)-box 1/2/3-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_800.1_01144.t1 | gi|260796057|ref|XP_002593021.1| | hypothetical protein BRAFLDRAFT_212685 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_800.1_01144.t1 | gi|530584468|ref|XP_005286040.1| | PREDICTED: transcription factor SOX-2 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_800.1_01144.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_800.1_01144.t1 atggagtatcaccaacgggaaatggaagcggagatgcccaaggcccccgggcagacagctctacccccatccagccaggg tatgcacgtcccagtgacgggaccaggagggggaatgcatcaacagcaacattcaccaggatcgcaatctaatgtaagct caaataataataataacaattctaatggacaagctatgaccgctgctcaaaaacaaaaagaattggaccgtgtgaaacgg cctatgaacgctttcatggtgtggtcaagaggtcagaggcggaaaatggctcaagaaaacccgaaaatgcacaattctga aatcagtaaaagacttggtgcagaatggaaattgctatcagaagcagagaaaagacctttcattgatgaggcaaaaagac tgcgtgccattcacatgaaagaacacccagattataaatataggccgagaaggaagacgaaaaccctcatgaagaaggac aaatacctccctggaatgcccacgggcgctcccatccaagggagggatcccagcggtatgtaccccatgaacgggtatat gcccaacggatacccgatgatgcccgatcctaatgcctatcagcacatggccaatcaaatgtacggctacaacattccta cacaacctatggccaccggacagatgaccaccggttcctacatgaacggaagctcaagttacacaatgtccatgggaatg aatccgtattcgatgccaccgacgcaagttccaggagttaaacgggagcccaatcagcccagttccgcgggcccgcaagg cgggcaaccgggccggccggtaaatcccggagatttacgagaaatgatcagtatgtatttacccggagacgggtccgatc ctcatagtgctcagagactcgccatgcagcaggcccaggcgcaagcccattatcaaacacccacgtcggaaacagcggtg aacaatacagtgcccttgactcatatgtaa |
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Protein
| Protein ID | pfu_aug2.0_800.1_01144.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_800.1_01144.t1 MEYHQREMEAEMPKAPGQTALPPSSQGMHVPVTGPGGGMHQQQHSPGSQSNVSSNNNNNNSNGQAMTAAQKQKELDRVKR PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRAIHMKEHPDYKYRPRRKTKTLMKKD KYLPGMPTGAPIQGRDPSGMYPMNGYMPNGYPMMPDPNAYQHMANQMYGYNIPTQPMATGQMTTGSYMNGSSSYTMSMGM NPYSMPPTQVPGVKREPNQPSSAGPQGGQPGRPVNPGDLREMISMYLPGDGSDPHSAQRLAMQQAQAQAHYQTPTSETAV NNTVPLTHM |
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