Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_801.1_04585
Locus scaffold801.1 : 174537 ... 178331 : +
To GenomeBrowser scaffold801.1:174537..178331
Genes list of scaffold scaffold801.1
Synonym pfu_aug1.0_5704.1_67301

Manual annotation
Annotation by Blast2GO
Annotation GO
sodium-dependent glucose transporter 1-like GO:0006810

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_801.1_04585.t1 2 1 MFS_1 13 388 8.1e-23 80.7 7.1e-26 8.1e-23 80.7
pfu_aug2.0_801.1_04585.t1 2 2 MFS_1 375 427 8.1e-23 80.7 0.0075 8.6 4.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_801.1_04585.t1 gi|524883974|ref|XP_005098612.1| PREDICTED: sodium-dependent glucose transporter 1-like [Aplysia californica] 0.0

Transcript
Transcript IDpfu_aug2.0_801.1_04585.t1
Definition-
>pfu_aug2.0_801.1_04585.t1
atggctggtcaagctgggccgtccttccttgacctacagctcattaccaacgtctccctagatcgtggttcagccttctt
tacggctggcggcgtaggctacctttccggttcactggttacggggtacgtgttcgataaaataaaggacaaagtgttca
ttgtgttcatcagtttggttggaatgggcttgacaacggctgctataccgttttgttatatttatgaactaatggtgttc
gttcagctagtcagaggcatcactgctgggggtcttgatacaagtggaaatacattactttcaaggacttggggtaaaca
aggacgcatgtttatgcaggcattacatttcggatttgcgttcggtggttcattgtcccctttggctattgctccttttc
taagcgagcaaaattcagtagatgtctcagacggaaaagggaattcaaaaacctccgtgttcaacgtcagctcaacattg
tataatgctacgaatgattcctatggatccaacttaacactatttggcgattcaagcagtgggtcaactttatacatagc
gtactcgatcactgccttcatgtgcattgtttgtgccattccagctttcatcattttcgttcaaaatcgacgaagaagaa
agcatgaaaagaagagaaaacgggaacaaaacatagaatcggacgaagaaaaggaggaaaaacatcatgtcaaaatgact
agaaacatgaaaataattgtaattattaatttggtacttattttcatgttttattgtgctgtggaggactcttacatttc
ctttttatccacgttttgtgtcagagagttaaagtggacaaaagtcaagggtgctgtcgtcacttccgttctctggacag
cttttgctgtaggcagattggcggggattttcctggttgtcatattttccccttcaacattaatctttattcatgcttca
cttgagcttgcatcactgattgcaatttttgtgtctgtaactttcgaatttagtttaggtatgtggatatttagcccgat
tctcggattcgccatgtcagttatctttccctgtatttttacatggacggaggtttccttcatgccagtgactgggagac
tttcctccttattcctggttgtggcttgcacagcttcctccattaatcccataattcttggtgagataatggacaaattt
tctaatctatggttcgtttatttgttgacaggcgaagctgtccttctttatgtctttttaatcattgcattctatatatc
aagaaaagttttacgatcgaaacctgcatcttctgaaataacagtagaggcgagttaa

Protein
Protein IDpfu_aug2.0_801.1_04585.t1
Definition-
>pfu_aug2.0_801.1_04585.t1
MAGQAGPSFLDLQLITNVSLDRGSAFFTAGGVGYLSGSLVTGYVFDKIKDKVFIVFISLVGMGLTTAAIPFCYIYELMVF
VQLVRGITAGGLDTSGNTLLSRTWGKQGRMFMQALHFGFAFGGSLSPLAIAPFLSEQNSVDVSDGKGNSKTSVFNVSSTL
YNATNDSYGSNLTLFGDSSSGSTLYIAYSITAFMCIVCAIPAFIIFVQNRRRRKHEKKRKREQNIESDEEKEEKHHVKMT
RNMKIIVIINLVLIFMFYCAVEDSYISFLSTFCVRELKWTKVKGAVVTSVLWTAFAVGRLAGIFLVVIFSPSTLIFIHAS
LELASLIAIFVSVTFEFSLGMWIFSPILGFAMSVIFPCIFTWTEVSFMPVTGRLSSLFLVVACTASSINPIILGEIMDKF
SNLWFVYLLTGEAVLLYVFLIIAFYISRKVLRSKPASSEITVEAS

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495