Gene
| Gene Model ID | pfu_aug2.0_803.1_11190 |
|---|---|
| Locus | scaffold803.1 : 1 ... 42884 : + |
| To GenomeBrowser | scaffold803.1:1..42884 |
| Genes list of scaffold | scaffold803.1 |
| Synonym | pfu_aug1.0_1303.1_07892 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| fibroblast growth factor receptor 4-like | GO:0004713 GO:0016310 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_803.1_11190.t1 | 3 | 1 | I-set | 41 | 122 | 5.2e-38 | 128.7 | 4.2e-15 | 7.0e-12 | 45.0 |
| pfu_aug2.0_803.1_11190.t1 | 3 | 1 | Ig_2 | 44 | 107 | 1.5e-26 | 92.3 | 1.2e-08 | 1.9e-05 | 24.6 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 1 | V-set | 44 | 109 | 3.3e-14 | 52.7 | 0.00016 | 0.26 | 11.1 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 1 | C2-set_2 | 45 | 97 | 2.6e-06 | 27.2 | 0.0092 | 15.0 | 5.5 |
| pfu_aug2.0_803.1_11190.t1 | 3 | 1 | Ig_3 | 47 | 104 | 3.3e-21 | 75.5 | 1.0e-06 | 0.0017 | 18.8 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 1 | ig | 50 | 103 | 6.1e-16 | 58.2 | 2.2e-06 | 0.0036 | 17.3 |
| pfu_aug2.0_803.1_11190.t1 | 3 | 2 | Ig_2 | 154 | 226 | 1.5e-26 | 92.3 | 1.5e-12 | 2.5e-09 | 37.1 |
| pfu_aug2.0_803.1_11190.t1 | 3 | 2 | I-set | 161 | 226 | 5.2e-38 | 128.7 | 6.6e-14 | 1.1e-10 | 41.2 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 2 | C2-set_2 | 161 | 193 | 2.6e-06 | 27.2 | 8.1e-05 | 0.13 | 12.1 |
| pfu_aug2.0_803.1_11190.t1 | 3 | 2 | Ig_3 | 162 | 213 | 3.3e-21 | 75.5 | 6.5e-09 | 1.1e-05 | 25.8 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 2 | ig | 162 | 211 | 6.1e-16 | 58.2 | 2.2e-08 | 3.7e-05 | 23.7 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 2 | V-set | 191 | 219 | 3.3e-14 | 52.7 | 0.00012 | 0.2 | 11.5 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 3 | C2-set_2 | 208 | 222 | 2.6e-06 | 27.2 | 1.5 | 2500.0 | -1.6 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 3 | V-set | 246 | 267 | 3.3e-14 | 52.7 | 2.4 | 3900.0 | -2.3 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 3 | ig | 252 | 282 | 6.1e-16 | 58.2 | 2.8 | 4600.0 | -2.2 |
| pfu_aug2.0_803.1_11190.t1 | 3 | 3 | Ig_2 | 308 | 404 | 1.5e-26 | 92.3 | 4.0e-10 | 6.6e-07 | 29.3 |
| pfu_aug2.0_803.1_11190.t1 | 3 | 3 | Ig_3 | 308 | 396 | 3.3e-21 | 75.5 | 4.8e-11 | 7.9e-08 | 32.6 |
| pfu_aug2.0_803.1_11190.t1 | 3 | 3 | I-set | 310 | 409 | 5.2e-38 | 128.7 | 6.1e-13 | 1.0e-09 | 38.1 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 4 | V-set | 314 | 401 | 3.3e-14 | 52.7 | 5.8e-10 | 9.6e-07 | 28.6 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 4 | C2-set_2 | 315 | 347 | 2.6e-06 | 27.2 | 0.013 | 21.0 | 5.1 |
| pfu_aug2.0_803.1_11190.t1 | 4 | 4 | ig | 322 | 394 | 6.1e-16 | 58.2 | 6.1e-07 | 0.001 | 19.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_803.1_11190.t1 | gi|657806900|ref|XP_008330641.1| | PREDICTED: fibroblast growth factor receptor 4-like [Cynoglossus semilaevis] | 6.0e-28 |
| pfu_aug2.0_803.1_11190.t1 | gi|617516835|ref|XP_007543706.1| | PREDICTED: fibroblast growth factor receptor 4-like [Poecilia formosa] | 7.0e-28 |
| pfu_aug2.0_803.1_11190.t1 | gi|734604203|ref|XP_010729140.1| | PREDICTED: fibroblast growth factor receptor 4 [Larimichthys crocea] | 2.0e-27 |
| pfu_aug2.0_803.1_11190.t1 | gi|583979884|ref|XP_006785266.1| | PREDICTED: fibroblast growth factor receptor 4-like [Neolamprologus brichardi] | 1.0e-26 |
| pfu_aug2.0_803.1_11190.t1 | gi|551524210|ref|XP_005813590.1| | PREDICTED: fibroblast growth factor receptor 4-like [Xiphophorus maculatus] | 1.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_803.1_11190.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_803.1_11190.t1 ttccagacactgaatatgtgataaaggtcacggcgtacaataacgcaggggaaggggtagccacgtaccaaagaatccat actcttaaaggtgcaccaatattatggggcggatcccggacctataacagaatagaagtggaagaaaatagcagaatcaa acttaaatgcaaagtttcgggaaaacccaaaccatataaagtctggttcatcaacaatactcaaatatcgacacataaca acgacaggttctcacttcgggacagtggcttagtgattttacccacgacactgaacgattcaggaacttactctatgcta gctgagaatctccatggcaatgtatggtgtaatcatacgcttaaagtcttaccggacgaggtcgaagatgtagagaaaag accatcccgcaacattgaaggtaaaccaagatggcggaacttcaataaaatggaagactaccagtccttgccgacacatg tcaaggcagaattgagatgtccagcatgcggaacaccaaaacccaacattacgtggtacaagggacacgaacgtctcatt taccgtacacggggatggaagctatacatagactccctgaatgtccgagacgaggggaaatacacatgtgtggtagagaa caagtttgggaagattaattacaccatagaaatcaatgtcatcggaggggatctccaacaacaccaggttacagcaccca cagcaaaaccccaaaacacccaatacaaaatcacagagcagacaagcacagaaagagacgcaaaagggacaaggaacgtc aatgcacaacacagaaacagcaaagacagaggactacacataaaccaacaagaccaatgtgctaccggtgccgacttagg acggccatctgccatggaaatagcagaagatcgtgttctcaccaaaccaatcgttcgtggcccgaccaaccagaccgtga cggtgggcaacaatgtcacatttgagtgcacattgatgatgaggggattacagccccatattcagtggatcaaacactac aaagtcaacgattcttacatgtctccctcgggggacccctatatcaaactaatacagcaatcaaatttcaatgtcaccga cccagaagttctaaacctacctgacgtgacactcgatgatgcaggatggtacacatgtttggtcagcaacagtctgggac ggagttaccagagtgcttggttaaccgtagaagcagagaagattgcagcggaacccatgaaaacaacaccaaaggaatga |
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Protein
| Protein ID | pfu_aug2.0_803.1_11190.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_803.1_11190.t1 PDTEYVIKVTAYNNAGEGVATYQRIHTLKGAPILWGGSRTYNRIEVEENSRIKLKCKVSGKPKPYKVWFINNTQISTHNN DRFSLRDSGLVILPTTLNDSGTYSMLAENLHGNVWCNHTLKVLPDEVEDVEKRPSRNIEGKPRWRNFNKMEDYQSLPTHV KAELRCPACGTPKPNITWYKGHERLIYRTRGWKLYIDSLNVRDEGKYTCVVENKFGKINYTIEINVIGGDLQQHQVTAPT AKPQNTQYKITEQTSTERDAKGTRNVNAQHRNSKDRGLHINQQDQCATGADLGRPSAMEIAEDRVLTKPIVRGPTNQTVT VGNNVTFECTLMMRGLQPHIQWIKHYKVNDSYMSPSGDPYIKLIQQSNFNVTDPEVLNLPDVTLDDAGWYTCLVSNSLGR SYQSAWLTVEAEKIAAEPMKTTPKE |
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