Gene
| Gene Model ID | pfu_aug2.0_803.1_11192 |
|---|---|
| Locus | scaffold803.1 : 66353 ... 96905 : - |
| To GenomeBrowser | scaffold803.1:66353..96905 |
| Genes list of scaffold | scaffold803.1 |
| Synonym | pfu_aug1.0_1842.1_51432 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_803.1_11192.t1 | 5 | 1 | I-set | 24 | 92 | 5.4e-27 | 93.4 | 4.4e-14 | 7.2e-11 | 41.8 |
| pfu_aug2.0_803.1_11192.t1 | 2 | 1 | V-set | 25 | 96 | 4.2e-10 | 39.5 | 3.6e-07 | 0.0006 | 19.6 |
| pfu_aug2.0_803.1_11192.t1 | 4 | 1 | Ig_2 | 27 | 95 | 4.6e-20 | 71.5 | 6.0e-09 | 9.9e-06 | 25.5 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 1 | Ig_3 | 27 | 92 | 3.8e-14 | 52.9 | 1.7e-08 | 2.8e-05 | 24.5 |
| pfu_aug2.0_803.1_11192.t1 | 4 | 1 | ig | 36 | 92 | 2.6e-10 | 40.2 | 2.1e-06 | 0.0035 | 17.4 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 2 | I-set | 129 | 251 | 5.4e-27 | 93.4 | 1.1e-13 | 1.8e-10 | 40.5 |
| pfu_aug2.0_803.1_11192.t1 | 4 | 2 | Ig_2 | 129 | 212 | 4.6e-20 | 71.5 | 4.7e-12 | 7.7e-09 | 35.5 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 2 | Ig_3 | 129 | 199 | 3.8e-14 | 52.9 | 1.3e-06 | 0.0022 | 18.4 |
| pfu_aug2.0_803.1_11192.t1 | 2 | 2 | V-set | 134 | 204 | 4.2e-10 | 39.5 | 9.2e-05 | 0.15 | 11.9 |
| pfu_aug2.0_803.1_11192.t1 | 4 | 2 | ig | 143 | 198 | 2.6e-10 | 40.2 | 1.2e-06 | 0.002 | 18.2 |
| pfu_aug2.0_803.1_11192.t1 | 4 | 3 | ig | 219 | 235 | 2.6e-10 | 40.2 | 1.3 | 2200.0 | -1.2 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 3 | Ig_3 | 223 | 238 | 3.8e-14 | 52.9 | 0.017 | 28.0 | 5.3 |
| pfu_aug2.0_803.1_11192.t1 | 4 | 3 | Ig_2 | 249 | 264 | 4.6e-20 | 71.5 | 0.13 | 210.0 | 2.1 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 3 | I-set | 253 | 276 | 5.4e-27 | 93.4 | 0.038 | 63.0 | 3.5 |
| pfu_aug2.0_803.1_11192.t1 | 4 | 4 | ig | 253 | 260 | 2.6e-10 | 40.2 | 6.6 | 11000.0 | -3.4 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 4 | Ig_3 | 254 | 263 | 3.8e-14 | 52.9 | 0.57 | 940.0 | 0.4 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 1 | fn3 | 284 | 370 | 0.0 | 170.3 | 2.0e-09 | 3.4e-06 | 27.1 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 4 | I-set | 289 | 306 | 5.4e-27 | 93.4 | 1.7 | 2800.0 | -1.8 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 2 | fn3 | 379 | 453 | 0.0 | 170.3 | 8.5e-14 | 1.4e-10 | 41.1 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 3 | fn3 | 485 | 568 | 0.0 | 170.3 | 1.1e-09 | 1.8e-06 | 27.9 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 5 | Ig_3 | 497 | 503 | 3.8e-14 | 52.9 | 8.3 | 14000.0 | -3.3 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 5 | I-set | 522 | 566 | 5.4e-27 | 93.4 | 4.4 | 7300.0 | -3.1 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 4 | fn3 | 583 | 670 | 0.0 | 170.3 | 4.5e-16 | 7.4e-13 | 48.4 |
| pfu_aug2.0_803.1_11192.t1 | 5 | 5 | fn3 | 684 | 766 | 0.0 | 170.3 | 1.2e-08 | 2.0e-05 | 24.6 |
| pfu_aug2.0_803.1_11192.t1 | 4 | 4 | Ig_2 | 1035 | 1067 | 4.6e-20 | 71.5 | 0.13 | 210.0 | 2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_803.1_11192.t1 | gi|260792651|ref|XP_002591328.1| | hypothetical protein BRAFLDRAFT_216524 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_803.1_11192.t1 | gi|617389956|ref|XP_007549161.1| | PREDICTED: immunoglobulin superfamily DCC subclass member 4-like [Poecilia formosa] | 0.0 |
| pfu_aug2.0_803.1_11192.t1 | gi|658841163|ref|XP_008402980.1| | PREDICTED: immunoglobulin superfamily DCC subclass member 4 isoform X2 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_803.1_11192.t1 | gi|658841161|ref|XP_008402979.1| | PREDICTED: immunoglobulin superfamily DCC subclass member 4 isoform X1 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_803.1_11192.t1 | gi|410912298|ref|XP_003969627.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_803.1_11192.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_803.1_11192.t1 atgtctccctgcttaaatcgtttcggaatacaagggtttccccatagactgtcccaaggtaaatcgtacactaaagagcc gacttcccagacagtgactgtaggaggtgtggctcgctttgagtgtcagatcgaggcagaaccacctcccctctacacct ggctcaaagacgagaaagaacaaatcacagccaatgacaggtttattattatatctacgggtatcttacaaattatcaat gtgactcaggctgatgagggttcatataggtgctccagtaccccaggagggctacacaacttaccagaccaggtggagga catcaagtggtaccgcagcagtgaggcacaactcaccgtcatccctaaaactggaagcagagcaccagaaatcaaggctg cccctcaagatgtagtggtagaacaaggacaaatgattgttttggaatgcctggtggatggagaacccaagcctagtgtt acttgggagagacagagtggtagattgctgccctccagatccagtattttagggagtaatctaaaactgttagagaccag agtaaatgacactgatgtttacatatgtagagtgagaagtagtggacagcctgacgttacagctcaagcacgggtcacgc tggacaaggacgacctgatagttttgaacaccctccctcactattcaggttactaccagtgtatagctagtaatggtgtt aactatgccacagcctttgccaggctcagtatcacagcagcaggttactaccagtgtatagctagtaatggtgttaacta tgccacagcctttgccaggctcagcatcacagcagcagccaatcgtcctgatgcgccccagaatgtacaagcacaggcat atggtaaagatcagctgtacatctcgtggacagcgtccagtcacaaaccttgctgtgcagtactagcttacacagtggat atttacaagacaaatgtcgctggtacaggcagttcaaatcccagtgacaacatcctgaattttgtggtgatggacggtac aacaaagctgatagatgggttggagccgtacactaactactcagtattcgtgagagcgttcaacagtcaggtgccagatg tagcacctataattcgcttggctagtacaactcctacaagcatacagattgagtgggatgagcttaggctaccagacaga aatggggtcattatcggctataaagtatattacatggccgagggggttaaatccatgaagatcgatgatgcacgcggaag tgctctttcccacaccatcacaggtctcgagccagctaccacatacaaggtccgagtattagcagggactaaatcaggct ttcctcacttcaatgataacaaatggccttgggtacactttactacctcaggaataggaaaaccaatcctgaatcttaca gtacctctaacacccgtggaccttgccattgttccgatgacacctatctccgtcaacattacctggagacaactggctag cgaatacccagtcgtaagctacactctggtctacaaaaggaacggcaatgtatccgaggaggagaaggccctcgtcatac aaattactgatccaaatgctcggttcttcactgttggaaatctagttgaggacgctaactacgaattctgcctggttgcc aacaacgagtttggatcttcaggacctgctatagaagagtacttcaactctaaggaccctctgccgccaccacccaaaaa tctcaagatcatcaacagaacttctactaacttgtacctgaattggactcagcctaatccagcaattcaaatagattatt tcgaagtgcggtaccatccctggatttttgaaaaagacactcaacatgatagagtgattcaaaaagtcagcaccaagatt ggtatgcaaattgtctccttacgaccatacaccttttatcagattgacattcgtgcaatgacaaacaagggacgctggag taaatggagtaactctgtgattgaacatacactagaagatctgccatcagagccaagagaagttaaagctatactgacag ataacggcatcgagataaattggaagcccccagcacagccaaacggtaacatcaccacctatatacttgagtaccagatc attgttacacctcagaatcctcatcaatggaaaatcctcagagtcaatggttcttccacctctatgaagttacaggaaaa gttaaatggaaagttaacaatccgtctgaaggcctgtacaagtgttggccctggtccttttactgctgctgtagagctgg acaacggcactacagcgtcaagaacaaaagaattgaatccctggcatgatcaaagactgagtatcatagtcggcgttgcc atagcaattctttgtatcgtcatctgtattataatcattcttcttcgcaacagatgtgtatcaaacagttatccacatac tcagcgagctctggtccacggtaatggccatatgccaatacagggaaatggacatgtagtggatggaaggggtgtcaatg ctttccaacttgagacaatgacaccaatgttaactagagatggtgaaaatgaacagtctgactcaaagggttgtggcagc ggtaatttaattgttactcctaatggcacaaggattaatggatatgttccattcaaaaatgggatgagaaacgcccatac ccctaatggtcgtgtgacgcatcatatctaccgagaaaatgcatatccagagggttgtggcagcggtaatttaattgtta ctcctaatggcacaaggattaatggatatgttccattcaaaaatgggatgagaaacgcccatacccctaatggtcgtgtg acgcatcatatctaccgagaaaatgcatatccagaggaatcatgtggtctcatagcagccatgttgtcagggactgatag aattcatacctcagaggaagataaaaatacctcaaaatcaccagagcgtgactccctgttagatggtatagaccaaagtc tggagtcttcgctggaggaggggggaggggaccacacatgtgacatgcagctacctcatacctcccctattaaccaaggg ccacagagtatagctaaccacagtacctcaataacacacaattcttcaggtgacttttcaagtagtgctcacaataaagc agctgttgacggcatggtgaacgacatgccggccaacatggaaaaccgtgatggttgtaacgcctccgtagatataacct cgccatctctcaggaatacacatagttcctgttcaaatcaactctctacctcatttaacggtcatccctcggatgaccct cactgtctggataccaaaagggcaagtgctgggaatcggccctcggatcctcattcagaaaacctcagagacacttctat acctcaggaactctataaatctcctaaccaggagacctcatttgtacaacatgctaacctcagtggaatcttgaacgata atggagtcaaatcaaatgggctgaaggcttgtaaccttcaggaggtagtacccagtggggacaccaaagaaggtcaaagg tcaaattgtcaccctcagggaatgcccaagctttgccacaacggagataaagccacgatgtctacgtgtaattctcaagc atcggagaaacaacgcttgttgtctatattacctcaggaaaacaaggggaagagatttcaatcagtgccctggaatgaag ttagcgtataa |
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Protein
| Protein ID | pfu_aug2.0_803.1_11192.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_803.1_11192.t1 MSPCLNRFGIQGFPHRLSQGKSYTKEPTSQTVTVGGVARFECQIEAEPPPLYTWLKDEKEQITANDRFIIISTGILQIIN VTQADEGSYRCSSTPGGLHNLPDQVEDIKWYRSSEAQLTVIPKTGSRAPEIKAAPQDVVVEQGQMIVLECLVDGEPKPSV TWERQSGRLLPSRSSILGSNLKLLETRVNDTDVYICRVRSSGQPDVTAQARVTLDKDDLIVLNTLPHYSGYYQCIASNGV NYATAFARLSITAAGYYQCIASNGVNYATAFARLSITAAANRPDAPQNVQAQAYGKDQLYISWTASSHKPCCAVLAYTVD IYKTNVAGTGSSNPSDNILNFVVMDGTTKLIDGLEPYTNYSVFVRAFNSQVPDVAPIIRLASTTPTSIQIEWDELRLPDR NGVIIGYKVYYMAEGVKSMKIDDARGSALSHTITGLEPATTYKVRVLAGTKSGFPHFNDNKWPWVHFTTSGIGKPILNLT VPLTPVDLAIVPMTPISVNITWRQLASEYPVVSYTLVYKRNGNVSEEEKALVIQITDPNARFFTVGNLVEDANYEFCLVA NNEFGSSGPAIEEYFNSKDPLPPPPKNLKIINRTSTNLYLNWTQPNPAIQIDYFEVRYHPWIFEKDTQHDRVIQKVSTKI GMQIVSLRPYTFYQIDIRAMTNKGRWSKWSNSVIEHTLEDLPSEPREVKAILTDNGIEINWKPPAQPNGNITTYILEYQI IVTPQNPHQWKILRVNGSSTSMKLQEKLNGKLTIRLKACTSVGPGPFTAAVELDNGTTASRTKELNPWHDQRLSIIVGVA IAILCIVICIIIILLRNRCVSNSYPHTQRALVHGNGHMPIQGNGHVVDGRGVNAFQLETMTPMLTRDGENEQSDSKGCGS GNLIVTPNGTRINGYVPFKNGMRNAHTPNGRVTHHIYRENAYPEGCGSGNLIVTPNGTRINGYVPFKNGMRNAHTPNGRV THHIYRENAYPEESCGLIAAMLSGTDRIHTSEEDKNTSKSPERDSLLDGIDQSLESSLEEGGGDHTCDMQLPHTSPINQG PQSIANHSTSITHNSSGDFSSSAHNKAAVDGMVNDMPANMENRDGCNASVDITSPSLRNTHSSCSNQLSTSFNGHPSDDP HCLDTKRASAGNRPSDPHSENLRDTSIPQELYKSPNQETSFVQHANLSGILNDNGVKSNGLKACNLQEVVPSGDTKEGQR SNCHPQGMPKLCHNGDKATMSTCNSQASEKQRLLSILPQENKGKRFQSVPWNEVSV |
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