Gene
| Gene Model ID | pfu_aug2.0_803.1_11195 |
|---|---|
| Locus | scaffold803.1 : 188239 ... 213324 : - |
| To GenomeBrowser | scaffold803.1:188239..213324 |
| Genes list of scaffold | scaffold803.1 |
| Synonym | pfu_aug1.0_9170.1_60560 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_803.1_11195.t1 | 4 | 1 | Smg4_UPF3 | 13 | 179 | 0.0 | 167.3 | 0.0 | 0.0 | 167.3 |
| pfu_aug2.0_803.1_11195.t1 | 4 | 2 | Smg4_UPF3 | 254 | 286 | 0.0 | 167.3 | 1.0 | 15000.0 | -7.3 |
| pfu_aug2.0_803.1_11195.t1 | 4 | 3 | Smg4_UPF3 | 594 | 625 | 0.0 | 167.3 | 0.13 | 1900.0 | -1.4 |
| pfu_aug2.0_803.1_11195.t1 | 4 | 4 | Smg4_UPF3 | 675 | 720 | 0.0 | 167.3 | 0.035 | 520.0 | 0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_803.1_11195.t1 | gi|676483053|ref|XP_009062899.1| | hypothetical protein LOTGIDRAFT_235411 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_803.1_11195.t1 | gi|524911022|ref|XP_005110382.1| | PREDICTED: regulator of nonsense transcripts 3B-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_803.1_11195.t1 | gi|524911020|ref|XP_005110381.1| | PREDICTED: regulator of nonsense transcripts 3B-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_803.1_11195.t1 | gi|241723783|ref|XP_002404304.1| | regulator of nonsense transcripts 3B, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_803.1_11195.t1 | gi|585701803|ref|XP_006822949.1| | PREDICTED: regulator of nonsense transcripts 3A-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_803.1_11195.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_803.1_11195.t1 atgaagacagataaaaagagagatggttcctctcttccaacgaaggttgtgatgaggcgtcttccaccaagtttgacccc agaggatttgatagagcaaatttctcctctaccaaaccatgacttcttctactttgtcaaagcagatatgagtttgggga gtagtgcattcacaagggcatacataaattttacaaatgcagaagaaatcttcaatttccgggataaatttgatggctat gtctttgttgatggtaaaggaaatgaatacccagctattgtagaattttcaccttttcaaaaagttccaaaaagaaaaac aaagaaaccagatgctaaaaaaggaacaattgaacaggatccagattaccagaaatttctcaagactctggaatccccgg aggaagaagaagtgaaatctctggactcttacctggaagacctggaggcaagagagaaagaaatgaaagcaaacaaggga tgcccaaagaccaccactccacttattgagtatttagtgcgtagaagagaggagaaaaaggcaaatatgctgaaaataca agaagaaaggaaaaagagagaacaggagaggagaagattaagagatgaagaaaggaggaaaagaagagaaaaggaaagag aacgtgaacaagaaagattgagagagaaacagagggagaaaaatccagactcaaagagtgagcaacctgtaaaggtttta atgaaaaatcctgacagagaaaaagattctgataaagtttctagaacagagaagtccggagaaaaggatgtcagcaaatc aaaggaaacaaaggaagaagaaaaaaggaaagagagagaaaaactgaggttctccaaggagaacagagagaagatgaaga tagaaaagacgagtaaacaagatagcagtaagagtggacgtgacgttagaggtgatagcgcaaagaagacggaagagaaa ggggagagcagtaaagtagggaggagtgaacgtaaagatacaagcaggaaaactgatacttatggagacaggaagtatga agaaaagaaaggaagatccgggaaagattacgacgaacgagagaggggcaaacctgacagagcaaaggacagagagcagg gcagacaaagaggggataaagactttgatagaagagataaagactttgatagaagagataaagactacgatagaagagat aaagattatgatagaagagaaaaagattatgatagaagagataaagacttcgatagaagagataaagacaacgatagaag agataaagattccgatagaagagataaagattatgatagaagagataaagattccgatagaagagataaagactacgata gaagagataaagattccgatagaagagataaagactacgatagaagagataaagattccgatagaagagataaagattat gatagaagagataaagacttcgatagaagagataaagacttcgatagaagagataaagacttcgatagaagagataaagg tgggagggactgggatagaagggatgaggactatgactacaaaaatagggagaggcacgataaatacaggggggagaaat ctgagacggaaaggtctgatgccagtcgtaagaagtctacagagtcgggggttagtcagagtggaaaagttactgccgag aacaagaaagataaaccagtgaagacaaagagctcaacacctactgtagctaaaggaaaaggagaggttgttcccacaga aaaagttcaggatcagaaagtggacgaaaaaactaacgatgcaaagacagacattcaaacaatggataaagacaagaaga cagacgatgtgaagaaagacgtgaaagaggacaggagtacaccgtcaccagatctggccatcatgtcaaagtctacagac tccatagaggaagggagaccaggcagtgctgggagtgaaacatcggaaaaaggacccggagaagaaaaacgcaggaaaag gagggttgttcccacagaaaaagctcaggatcagaaagtggacgaaaaaactaacaatgtgaacacagacgttcaaacag tggataaagacaagaagacagaagatgtgaagaaagacgtgaaagaggacaggagtacaccgtcaccagatctggccgtc atgtcaaaatctaccgactccatagaggaaggtagaccaggcagtgccgggagtgaaacatctgaaaaaggacctgggga ggaaaaacgcaggaaaaggaggatagtaagagtggtgatggtaagctttcaaggcaaggctctagtgacagtaagaaaac cgtttcaagacagaactcggatgaggtcaaaaagcccctttctcggcaaaactccggtgaatcgaagaaatcgttatcga gacaaaattcgaacgagtcaaagaagacagtgtcaaggcagagctctgatgaaggaaagaagctatcgccaagacaagat ccagaggaaagcggtcaggcgtcagaganaagttgttcagactgatgagaactcatcaaataatgtaacagaaagtgaag ttggtgttccaattctggatgtagaaatgagcagcaaagcagaggatgaagtcaaactagatactggtaacctgatctgc agtcaaactgatgaaataaaaagcagtcaaaatgataacatcagaagcagtcaaactgatgacctgagtaacaatcaaaa tgctgcagatagtgctagccaaatagaaagtatgccaactcaggataatattacaacggatgaaaatcggtgtgcggaag aaataccagtagaaaatactgatgtcaaatctgaaattgatgaaggcactgcagtgtag |
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Protein
| Protein ID | pfu_aug2.0_803.1_11195.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_803.1_11195.t1 MKTDKKRDGSSLPTKVVMRRLPPSLTPEDLIEQISPLPNHDFFYFVKADMSLGSSAFTRAYINFTNAEEIFNFRDKFDGY VFVDGKGNEYPAIVEFSPFQKVPKRKTKKPDAKKGTIEQDPDYQKFLKTLESPEEEEVKSLDSYLEDLEAREKEMKANKG CPKTTTPLIEYLVRRREEKKANMLKIQEERKKREQERRRLRDEERRKRREKEREREQERLREKQREKNPDSKSEQPVKVL MKNPDREKDSDKVSRTEKSGEKDVSKSKETKEEEKRKEREKLRFSKENREKMKIEKTSKQDSSKSGRDVRGDSAKKTEEK GESSKVGRSERKDTSRKTDTYGDRKYEEKKGRSGKDYDERERGKPDRAKDREQGRQRGDKDFDRRDKDFDRRDKDYDRRD KDYDRREKDYDRRDKDFDRRDKDNDRRDKDSDRRDKDYDRRDKDSDRRDKDYDRRDKDSDRRDKDYDRRDKDSDRRDKDY DRRDKDFDRRDKDFDRRDKDFDRRDKGGRDWDRRDEDYDYKNRERHDKYRGEKSETERSDASRKKSTESGVSQSGKVTAE NKKDKPVKTKSSTPTVAKGKGEVVPTEKVQDQKVDEKTNDAKTDIQTMDKDKKTDDVKKDVKEDRSTPSPDLAIMSKSTD SIEEGRPGSAGSETSEKGPGEEKRRKRRVVPTEKAQDQKVDEKTNNVNTDVQTVDKDKKTEDVKKDVKEDRSTPSPDLAV MSKSTDSIEEGRPGSAGSETSEKGPGEEKRRKRRIVRVVMVSFQGKALVTVRKPFQDRTRMRSKSPFLGKTPVNRRNRYR DKIRTSQRRQCQGRALMKERSYRQDKIQRKAVRRQRXVVQTDENSSNNVTESEVGVPILDVEMSSKAEDEVKLDTGNLIC SQTDEIKSSQNDNIRSSQTDDLSNNQNAADSASQIESMPTQDNITTDENRCAEEIPVENTDVKSEIDEGTAV |
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