Gene
| Gene Model ID | pfu_aug2.0_81.1_03566 |
|---|---|
| Locus | scaffold81.1 : 125627 ... 134655 : - |
| To GenomeBrowser | scaffold81.1:125627..134655 |
| Genes list of scaffold | scaffold81.1 |
| Synonym | pfu_aug1.0_1782.1_51414 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 40s ribosomal protein s3 | GO:0002181 GO:0003684 GO:0003723 GO:0003735 GO:0005634 GO:0006281 GO:0008534 GO:0022627 GO:0030218 GO:0043009 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_81.1_03566.t1 | 1 | 1 | KH_2 | 20 | 80 | 2.8e-10 | 39.5 | 6.6e-14 | 4.9e-10 | 38.8 |
| pfu_aug2.0_81.1_03566.t1 | 1 | 1 | Ribosomal_S3_C | 84 | 157 | 5.2e-15 | 55.4 | 1.4e-18 | 1.0e-14 | 54.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_81.1_03566.t1 | gi|573879304|ref|XP_006627871.1| | PREDICTED: 40S ribosomal protein S3-like isoform X2 [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_81.1_03566.t1 | gi|392881056|gb|AFM89360.1| | 40S ribosomal protein S3-like protein [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_81.1_03566.t1 | gi|734634365|ref|XP_010745713.1| | PREDICTED: 40S ribosomal protein S3 [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_81.1_03566.t1 | gi|392873428|gb|AFM85546.1| | 40S ribosomal protein S3-like protein [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_81.1_03566.t1 | gi|41056077|ref|NP_957447.1| | 40S ribosomal protein S3 [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_81.1_03566.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_81.1_03566.t1 atggctactcaaataagcaagaaaaggaagtttgttgctgatggagtcttcaaggcagaattgaacaactttttgactcg tgagttggctgaagacggttacagtggtgttgaagtacgagttacacccacaagaacagaaatcattatcttagccactc gtacacagaatgtacttggagagaagggcaggaggataagggaactgacctctgtagtacagaaaagattcaacttccca gaaggcactgtggaaagagcatgctatggtgtactacgattcatcatggagagtggagctaagggctgtgaagtagtggt gtccggtaagctgagaggccagagagccaagtctatgaagtttgtcgacggccttatgatccactcaggagatcccatca atgattacgttgatactgctgtcagacacgtacttctcagacaaggtgtgctgggaattaaagtcaaaattatgttacca tgggatcccagtggtaagatcggacccaagaggccgttacctgatcatgtcagtgtggtagaacctaaagacgaagcagc accagcacatccatacagtgaacagaaaggtgccaaaccaacagagccacagcaagcgcctgcacagtgatatgtgtga |
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Protein
| Protein ID | pfu_aug2.0_81.1_03566.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_81.1_03566.t1 MATQISKKRKFVADGVFKAELNNFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTSVVQKRFNFP EGTVERACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPINDYVDTAVRHVLLRQGVLGIKVKIMLP WDPSGKIGPKRPLPDHVSVVEPKDEAAPAHPYSEQKGAKPTEPQQAPAQXYV |
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