Gene
| Gene Model ID | pfu_aug2.0_81.1_03570 |
|---|---|
| Locus | scaffold81.1 : 190604 ... 212081 : + |
| To GenomeBrowser | scaffold81.1:190604..212081 |
| Genes list of scaffold | scaffold81.1 |
| Synonym | pfu_aug1.0_25084.1_26216 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein transport protein sec24c isoform x3 | GO:0015031 GO:0046907 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_81.1_03570.t1 | 3 | 1 | Sec23_BS | 268 | 303 | 7.1e-19 | 68.1 | 4.7 | 14000.0 | -3.4 |
| pfu_aug2.0_81.1_03570.t1 | 2 | 1 | Gelsolin | 315 | 330 | 8.5e-11 | 41.3 | 0.076 | 220.0 | 1.5 |
| pfu_aug2.0_81.1_03570.t1 | 1 | 1 | zf-Sec23_Sec24 | 377 | 416 | 6.1e-17 | 60.9 | 5.6e-20 | 1.6e-16 | 59.5 |
| pfu_aug2.0_81.1_03570.t1 | 1 | 1 | Sec23_trunk | 455 | 700 | 0.0 | 276.6 | 0.0 | 0.0 | 276.0 |
| pfu_aug2.0_81.1_03570.t1 | 3 | 2 | Sec23_BS | 705 | 788 | 7.1e-19 | 68.1 | 8.6e-22 | 2.6e-18 | 66.3 |
| pfu_aug2.0_81.1_03570.t1 | 1 | 1 | Sec23_helical | 802 | 903 | 3.2e-27 | 93.9 | 1.8e-30 | 5.5e-27 | 93.2 |
| pfu_aug2.0_81.1_03570.t1 | 2 | 2 | Gelsolin | 920 | 988 | 8.5e-11 | 41.3 | 6.0e-13 | 1.8e-09 | 37.1 |
| pfu_aug2.0_81.1_03570.t1 | 3 | 3 | Sec23_BS | 998 | 1041 | 7.1e-19 | 68.1 | 5.0 | 15000.0 | -3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_81.1_03570.t1 | gi|676485111|ref|XP_009063558.1| | hypothetical protein LOTGIDRAFT_221280 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_81.1_03570.t1 | gi|524890619|ref|XP_005101853.1| | PREDICTED: protein transport protein Sec24C-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_81.1_03570.t1 | gi|291232176|ref|XP_002736034.1| | PREDICTED: protein transport protein Sec24C-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_81.1_03570.t1 | gi|294714081|gb|ADF30257.1| | Sec24 family member C [Danio rerio] | 0.0 |
| pfu_aug2.0_81.1_03570.t1 | gi|115712785|ref|XP_783728.2| | PREDICTED: protein transport protein Sec24C [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_81.1_03570.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_81.1_03570.t1 atgaacccacaatattcaggtcagatgccacccacaggatatggtggacaaccaggaaaccaaatgagacccccaggacc agggcaaaatatgtacaatggccctccgcagcctggacagtatggaggtcctatgccaccaaaacaaggaatgccacccg gtcagtatcagaacggaccaggcatggggaacttccccccacccagtggaggacctcagggggatacacagtttggtggt ccaaggccaccaatgccccctggtccaactaagccaattcaaggtccacctgggaatcagtttcagaggcctccatcaaa ctttggtggaccagggtctaacccacccacaagcttccctggtccaggatctgggccaccaaacaatataggaggtcccg gcaccggcccaccttctaattttggtacaggtccacccacaaatatgggaggccctggtgcgggcccaccatcaaacttt tctggacctgggaccgggccacctaccagctttgcaggtccaaattctggtctacagaacagctttccgggccctggatc aggccctcctacaggaatgatgggaggtaaaaatccaaggatgccgcctccagcttcccagccagggcaacagttgccaa accagatgggagcactcagtatctctggaggtccaagaggtcctacaccagggggtgcacctcctcctaatatgggtaaa ccaggtatgcctccaggtggaggaggccttcctccaatgagcaacccagcttcaaanccccaaaaaaactggacccagac cagatgccaagtccttttgttgaaatcttcctacagtatcttgtctgaccataaaattattcaagtcatcgaggatgacc gggcaaacagaactggatattttcaaacaaatgccaaaggccttgtgcctccacttgtaacaacaaagtttattgtgcaa gatcaaggaaactgcagtccacgttttatgaggagtaccatgtataatgtgccgtgtacgtcagatatgatgaaaaacag ctacataccatttgccctgaacatatgtccgtttgcttccgtagaagaaggggaacaagaacctccagtggtggaccttg gagagataggtcctgtcagatgtaagagatgtaaggcatacatgagtccagttatgcagtttatagatggtggaaggaga tttcagtgtgttttctgtggagcggccactgatgtaccagcagaatacttccagcatctagatcacacagggaggagggt ggattgttatgacagacctgaactctgtttaggatcttatgaatttgttgctacaaaagattattgtaaaaatggtgtaa tgcccaagcctccagcttttattttcatgattgatgtatcatataatgcagtaaaaagtggtttaaccaatctgatatgt gagagattaaaagatgatgtccttgttaacctaccaaaggaatctggtgctgatgagtcggaaattcgagtcggttttgt gacatatgcaaaagaaattcatttttataatgtcaagggcagtttagcacaaccccagatgttagtagtgtcggatttag atgatgtatttgtacctttgttagatggttttctagttacactttcagaatcagaagctgtgattgacagtttgttgtct caaattccccaaatgtttatggagtctcgtgagacagaaaccattctaggacctgtgatacaagccggactggatgccct gaaatcggcagactgttgtggtaaactgtatatattccacacttcactgccaatagctgaagctccaggaaaactgaaaa accgagaagatagaaaactactcggaacagaaaaagaaaaaaccatactgactccacagaacaatttctacaccaacctt gggaaggaatgtgtagcggcaggttgtagcgtagatatattcctcttccccaactcgtacatagacgttgcttcaatgtc ggaggtctgtcgactcaccggaggaaatatgtataaatatagctatttccaggctgatttagatggtgaaagatttatcg aggatttgaaaaagaatgttcaaaaccaaagagcctttgatgccatacttagagtcagaacaagtacaggaatccgggct gttgacttttacggtaatttcttcatggcaaatactacagatgtagaaatggcctctgtagacagggatcaggcaataag cgtagagatcaaacatgacgataaactcaatgagagcgatggagcgtacattcaagttgctgcattatacaccagcgtga gtggtaagaggcggctacgtatccataacctctcactgaactgttgtactcagatggctgatttattcagaaattgtgaa ttggatactctcgtcaactttatgtcaaaacaagttatacgtactgccttgaacacgacacctaaacaagtaagagaagc agtgatgaatcaagtatcgcagatcttagcgtgctataggaagaattgtgctagcccttcctcggccggacagctgatat tacccgagtgtatgaaactcctacctgtatactcaaactgtattatcaaaagtgacggtttacagggaggtcaagaaatt tcaacagacgatcgtagttatttgatgcatctcatcaattctatggacgtaactaattctcatgtgttcttctatcctac actcatacctgttcacaatttggatgtagagagtacagatctgcccacagccataagatgttctgctgaacgacttcaag aagatggtgtttacttactggagaatggtatatcaatgtttatgtggataggacacaaggttgacccacattggatacag caggtgtttggtgtacagagtgcagctcaggtcgatatagacaagtgcaccttactggaccttgacaatgagctatctca gagattacgacaaatcatcaatgatatcagatgtggtagacacagatatatgaagttaacggttgttcgacaaagagaca aattagaagcttggtttaatcatttcttggtcgaggataaaggacttaacggcagtgcttcctacgtagacttcctgtgt catatacacaaagaaatcagaaacttgctcagctaa |
|
Protein
| Protein ID | pfu_aug2.0_81.1_03570.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_81.1_03570.t1 MNPQYSGQMPPTGYGGQPGNQMRPPGPGQNMYNGPPQPGQYGGPMPPKQGMPPGQYQNGPGMGNFPPPSGGPQGDTQFGG PRPPMPPGPTKPIQGPPGNQFQRPPSNFGGPGSNPPTSFPGPGSGPPNNIGGPGTGPPSNFGTGPPTNMGGPGAGPPSNF SGPGTGPPTSFAGPNSGLQNSFPGPGSGPPTGMMGGKNPRMPPPASQPGQQLPNQMGALSISGGPRGPTPGGAPPPNMGK PGMPPGGGGLPPMSNPASXPQKNWTQTRCQVLLLKSSYSILSDHKIIQVIEDDRANRTGYFQTNAKGLVPPLVTTKFIVQ DQGNCSPRFMRSTMYNVPCTSDMMKNSYIPFALNICPFASVEEGEQEPPVVDLGEIGPVRCKRCKAYMSPVMQFIDGGRR FQCVFCGAATDVPAEYFQHLDHTGRRVDCYDRPELCLGSYEFVATKDYCKNGVMPKPPAFIFMIDVSYNAVKSGLTNLIC ERLKDDVLVNLPKESGADESEIRVGFVTYAKEIHFYNVKGSLAQPQMLVVSDLDDVFVPLLDGFLVTLSESEAVIDSLLS QIPQMFMESRETETILGPVIQAGLDALKSADCCGKLYIFHTSLPIAEAPGKLKNREDRKLLGTEKEKTILTPQNNFYTNL GKECVAAGCSVDIFLFPNSYIDVASMSEVCRLTGGNMYKYSYFQADLDGERFIEDLKKNVQNQRAFDAILRVRTSTGIRA VDFYGNFFMANTTDVEMASVDRDQAISVEIKHDDKLNESDGAYIQVAALYTSVSGKRRLRIHNLSLNCCTQMADLFRNCE LDTLVNFMSKQVIRTALNTTPKQVREAVMNQVSQILACYRKNCASPSSAGQLILPECMKLLPVYSNCIIKSDGLQGGQEI STDDRSYLMHLINSMDVTNSHVFFYPTLIPVHNLDVESTDLPTAIRCSAERLQEDGVYLLENGISMFMWIGHKVDPHWIQ QVFGVQSAAQVDIDKCTLLDLDNELSQRLRQIINDIRCGRHRYMKLTVVRQRDKLEAWFNHFLVEDKGLNGSASYVDFLC HIHKEIRNLLS |
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