Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_810.1_01151
Locus scaffold810.1 : 74316 ... 84735 : -
To GenomeBrowser scaffold810.1:74316..84735
Genes list of scaffold scaffold810.1
Synonym pfu_aug1.0_16109.1_10895

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_810.1_01151.t1 2 1 AAA_18 52 178 1.8e-08 34.7 1.9e-11 4.7e-08 33.3
pfu_aug2.0_810.1_01151.t1 2 2 AAA_18 207 220 1.8e-08 34.7 1.0 2600.0 -1.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_810.1_01151.t1 gi|665814555|ref|XP_008555893.1| PREDICTED: nicotinamide riboside kinase 2 [Microplitis demolitor] 2.00386e-43
pfu_aug2.0_810.1_01151.t1 gi|197276650|ref|NP_001127842.1| nicotinamide riboside kinase [Nasonia vitripennis] 2.99878e-43
pfu_aug2.0_810.1_01151.t1 gi|676477551|ref|XP_009061145.1| hypothetical protein LOTGIDRAFT_234689 [Lottia gigantea] 1.99993e-41
pfu_aug2.0_810.1_01151.t1 gi|524893273|ref|XP_005103154.1| PREDICTED: nicotinamide riboside kinase 1-like isoform X1 [Aplysia californica] 2.0e-40
pfu_aug2.0_810.1_01151.t1 gi|752874671|ref|XP_011254663.1| PREDICTED: nicotinamide riboside kinase 1 [Camponotus floridanus] 3.0e-40

Transcript
Transcript IDpfu_aug2.0_810.1_01151.t1
Definition-
>pfu_aug2.0_810.1_01151.t1
atggcaaagaaacaacaggggtccgaggaccgttccctgcaggacccggagtcgactgcacatttcgttgacgtatcacc
ttcgaccactactctctgttgtcgatccgttagaaaggatgaaatccatcttaagatgataccatgtatacgagcaacga
acagtggaaagacaactctatccaagtaccttgtaaatactttaccaaactgccatgtgatatgccaagacaattacttc
tttaatgaaggccatcctaacatggtatgggttccagaagttaaacattttaattgggatgatttgtccagtttagacat
gacaagatttacagaggatgtagagaaatggataaacaagcaacgatcaatattagaatcccaaaaacagaagaaaattc
ttattgttgaaggatttaggatgctagcttacaaaccactggcccagttacttgataaaaagtacttcattaccatatca
gaggcagtttgtaaggaaagaagaagttccagggtttatgtgcctccagatgtacctggttatatggacaaagtagtgtg
gcctgaatatttgaatcatctacgggagcttaagcaagaaacaaacatagagtacattgatgggacagaagaccaggatg
cagtaaaggagaagatattgcagaatatattacaattcttagatacaaaaatatctaacatataa

Protein
Protein IDpfu_aug2.0_810.1_01151.t1
Definition-
>pfu_aug2.0_810.1_01151.t1
MAKKQQGSEDRSLQDPESTAHFVDVSPSTTTLCCRSVRKDEIHLKMIPCIRATNSGKTTLSKYLVNTLPNCHVICQDNYF
FNEGHPNMVWVPEVKHFNWDDLSSLDMTRFTEDVEKWINKQRSILESQKQKKILIVEGFRMLAYKPLAQLLDKKYFITIS
EAVCKERRSSRVYVPPDVPGYMDKVVWPEYLNHLRELKQETNIEYIDGTEDQDAVKEKILQNILQFLDTKISNI

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495