Gene
| Gene Model ID | pfu_aug2.0_8110.1_02952 |
|---|---|
| Locus | scaffold8110.1 : 43 ... 11486 : + |
| To GenomeBrowser | scaffold8110.1:43..11486 |
| Genes list of scaffold | scaffold8110.1 |
| Synonym | pfu_aug1.0_21769.1_11410 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_8110.1_02952.t1 | 2 | 1 | TMC | 49 | 114 | 3.9e-20 | 72.3 | 1.1e-23 | 3.9e-20 | 72.3 |
| pfu_aug2.0_8110.1_02952.t1 | 2 | 2 | TMC | 183 | 209 | 3.9e-20 | 72.3 | 0.17 | 620.0 | 0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_8110.1_02952.t1 | gi|260800851|ref|XP_002595310.1| | hypothetical protein BRAFLDRAFT_87540 [Branchiostoma floridae] | 2.0e-40 |
| pfu_aug2.0_8110.1_02952.t1 | gi|585667467|ref|XP_006817321.1| | PREDICTED: uncharacterized protein LOC102806362 [Saccoglossus kowalevskii] | 2.0e-40 |
| pfu_aug2.0_8110.1_02952.t1 | gi|260797479|ref|XP_002593730.1| | hypothetical protein BRAFLDRAFT_63989 [Branchiostoma floridae] | 2.0e-39 |
| pfu_aug2.0_8110.1_02952.t1 | gi|645035699|ref|XP_008216797.1| | PREDICTED: transmembrane channel-like protein 2 isoform X1 [Nasonia vitripennis] | 5.0e-33 |
| pfu_aug2.0_8110.1_02952.t1 | gi|645035702|ref|XP_008216798.1| | PREDICTED: transmembrane channel-like protein 2 isoform X2 [Nasonia vitripennis] | 5.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_8110.1_02952.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8110.1_02952.t1 atgcaggtacggtaccggaagagcaagcacacggagcagggggatgactacccgtttacatggagcatgttctgtctgtg ggaccattctatatacaccagaagcggagtcaaaaacagactgaagtcatttagtactgaactgaagataggtttcagtg aattcgctgtaacatcaaacctccttgacctggtttacggtcaaggtcttgtctggttaggactgtacttctctcccttg cttgccatggtagccgtcattaaacttttcattgtgttctactttcgatatttcgttgccaaatttgccaatgtcccacc taaaaagatgtttaaagcgtccagatccgggacattttatctatttttattgctgatgacatggttcctgtgcattgttc cagttggttatttcctttctgaactaacaccgtcgtggcactgtggacctttccaatctgagaaacgcgtgtatgacgtc atgggcatcgacctgggcactacatttacgggagattttgcgtgggtcaatgatgttattcgatacatgggaacagccat tgttgtcatcccgctaataatagtgttattgttggtgattttgtatttctacacaagagcaagttcttatagcagtctgg tgaaagaactaaggacacaactcatatttgaaagaagagttgaacgaaagaaggtatttgccaaggccttatttgcccca g |
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Protein
| Protein ID | pfu_aug2.0_8110.1_02952.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8110.1_02952.t1 MQVRYRKSKHTEQGDDYPFTWSMFCLWDHSIYTRSGVKNRLKSFSTELKIGFSEFAVTSNLLDLVYGQGLVWLGLYFSPL LAMVAVIKLFIVFYFRYFVAKFANVPPKKMFKASRSGTFYLFLLLMTWFLCIVPVGYFLSELTPSWHCGPFQSEKRVYDV MGIDLGTTFTGDFAWVNDVIRYMGTAIVVIPLIIVLLLVILYFYTRASSYSSLVKELRTQLIFERRVERKKVFAKALFAP |
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