Gene
| Gene Model ID | pfu_aug2.0_812.1_07912 |
|---|---|
| Locus | scaffold812.1 : 25186 ... 36035 : + |
| To GenomeBrowser | scaffold812.1:25186..36035 |
| Genes list of scaffold | scaffold812.1 |
| Synonym | pfu_aug1.0_9132.1_67996 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cleavage and polyadenylation specificity factor subunit partial | GO:0000398 GO:0003723 GO:0004521 GO:0005515 GO:0005847 GO:0006369 GO:0006378 GO:0006379 GO:0006398 GO:0006406 GO:0008409 GO:0030529 GO:0046872 GO:0090502 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_812.1_07912.t1 | 1 | 1 | Beta-Casp | 2 | 78 | 2.6e-15 | 56.4 | 1.6e-18 | 5.8e-15 | 55.3 |
| pfu_aug2.0_812.1_07912.t1 | 1 | 1 | RMMBL | 93 | 133 | 1.1e-11 | 44.3 | 5.9e-15 | 2.2e-11 | 43.3 |
| pfu_aug2.0_812.1_07912.t1 | 1 | 1 | CPSF73-100_C | 189 | 389 | 0.0 | 178.6 | 0.0 | 0.0 | 177.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_812.1_07912.t1 | gi|524907820|ref|XP_005109022.1| | PREDICTED: cleavage and polyadenylation specificity factor subunit 3-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_812.1_07912.t1 | gi|676455339|ref|XP_009053973.1| | hypothetical protein LOTGIDRAFT_188747 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_812.1_07912.t1 | gi|260815130|ref|XP_002602327.1| | hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_812.1_07912.t1 | gi|504140401|ref|XP_004582648.1| | 0.0 | |
| pfu_aug2.0_812.1_07912.t1 | gi|12846103|dbj|BAB27031.1| | unnamed protein product [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_812.1_07912.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_812.1_07912.t1 atgaacgaaaaaataagacggcagatcaacatcagcaatccatttgtcttcaaacacatatcaaatctcaaaagtatgga acactttgaggacatagggccctctgtagtactggccagccctggaatgatgcagagtggactttccagagaactgtttg agagctggtgtactgacaagagaaatggatgtattatagccggttactgtgtagagggaacattggcaaagcacatcctg tctgaaccagatgagatcatgaccatggccggacagaagttgcccctgaagtgttcagtggattatatctccttttctgc acatacagactacaaacagaccagtgaatttatacgcatcctcaaacctttacatgtggttttagtgcatggggagcaga atgaaatgtctcgacttaaggcagctctaatcagggaatatgaagatgattcagagtatcaaatacaagtccataatcct cgtaatactgtagcggtggaactacattttcgtggagaaaagatggccaaggtagtaggaagattagctgcagaaaggcc aaaagagggtgacaaagtatcaggaattctcgtgaagagaaactttaattaccacattatggcccctgaagatttatcta actatacagatcttgccatgagtacagtaacacagaggttgagtataggctatactgggaccattccactcctacgatac tatcttaatcagctctcatctgacgtagaacaggtggaaaagacggaaaaaccaacgatcaaggtcttcaagagcatcac tgtcaccatagaacatagcatggctgttatagagtgggtagccaatccagtcacagacatgtatgccgatgctgtggtag cagtcattttgagggcagaatctgaccccatgccacaaagaagtgttccgcctccattagttgttgacaaatctcacgta caggaatgtgtattagagatgttaacagacatgtttggttctgagtgcatcagtaagctgatcaaaaacaatctggttac cgtcactatagataaaacagtggctacaataaatgtggactcattggaggtgaaatgtgaggatgaaggtttacaacagg tgttacatacggctgttaccaagctattccaggccatagcccctgtaaaacatacgtga |
|
Protein
| Protein ID | pfu_aug2.0_812.1_07912.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_812.1_07912.t1 MNEKIRRQINISNPFVFKHISNLKSMEHFEDIGPSVVLASPGMMQSGLSRELFESWCTDKRNGCIIAGYCVEGTLAKHIL SEPDEIMTMAGQKLPLKCSVDYISFSAHTDYKQTSEFIRILKPLHVVLVHGEQNEMSRLKAALIREYEDDSEYQIQVHNP RNTVAVELHFRGEKMAKVVGRLAAERPKEGDKVSGILVKRNFNYHIMAPEDLSNYTDLAMSTVTQRLSIGYTGTIPLLRY YLNQLSSDVEQVEKTEKPTIKVFKSITVTIEHSMAVIEWVANPVTDMYADAVVAVILRAESDPMPQRSVPPPLVVDKSHV QECVLEMLTDMFGSECISKLIKNNLVTVTIDKTVATINVDSLEVKCEDEGLQQVLHTAVTKLFQAIAPVKHT |
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