Gene
| Gene Model ID | pfu_aug2.0_812.1_07914 |
|---|---|
| Locus | scaffold812.1 : 63356 ... 64898 : + |
| To GenomeBrowser | scaffold812.1:63356..64898 |
| Genes list of scaffold | scaffold812.1 |
| Synonym | pfu_aug1.0_4032.1_44841 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| leucine rich repeat protein | GO:0032501 GO:0044763 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_812.1_07914.t1 | 8 | 1 | LRR_4 | 45 | 55 | 2.6e-20 | 71.5 | 2.3 | 5000.0 | -2.8 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 1 | LRR_1 | 45 | 56 | 7.0e-16 | 55.8 | 4.0 | 8400.0 | -2.3 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 2 | LRR_1 | 66 | 85 | 7.0e-16 | 55.8 | 6.9e-05 | 0.15 | 12.2 |
| pfu_aug2.0_812.1_07914.t1 | 6 | 1 | LRR_8 | 68 | 107 | 1.8e-35 | 120.5 | 1.9e-09 | 4.0e-06 | 26.4 |
| pfu_aug2.0_812.1_07914.t1 | 8 | 2 | LRR_4 | 68 | 101 | 2.6e-20 | 71.5 | 0.00012 | 0.26 | 10.9 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 3 | LRR_1 | 89 | 106 | 7.0e-16 | 55.8 | 0.012 | 25.0 | 5.4 |
| pfu_aug2.0_812.1_07914.t1 | 6 | 2 | LRR_8 | 112 | 156 | 1.8e-35 | 120.5 | 2.0e-07 | 0.00041 | 20.0 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 4 | LRR_1 | 114 | 130 | 7.0e-16 | 55.8 | 0.075 | 160.0 | 2.9 |
| pfu_aug2.0_812.1_07914.t1 | 8 | 3 | LRR_4 | 114 | 149 | 2.6e-20 | 71.5 | 8.2e-08 | 0.00017 | 21.0 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 5 | LRR_1 | 134 | 155 | 7.0e-16 | 55.8 | 0.0019 | 4.0 | 7.8 |
| pfu_aug2.0_812.1_07914.t1 | 6 | 3 | LRR_8 | 182 | 238 | 1.8e-35 | 120.5 | 7.5e-08 | 0.00016 | 21.3 |
| pfu_aug2.0_812.1_07914.t1 | 8 | 4 | LRR_4 | 186 | 219 | 2.6e-20 | 71.5 | 0.02 | 43.0 | 3.8 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 6 | LRR_1 | 190 | 204 | 7.0e-16 | 55.8 | 0.33 | 690.0 | 1.0 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 7 | LRR_1 | 229 | 252 | 7.0e-16 | 55.8 | 0.023 | 49.0 | 4.5 |
| pfu_aug2.0_812.1_07914.t1 | 6 | 4 | LRR_8 | 232 | 289 | 1.8e-35 | 120.5 | 3.0e-05 | 0.064 | 13.0 |
| pfu_aug2.0_812.1_07914.t1 | 8 | 5 | LRR_4 | 260 | 292 | 2.6e-20 | 71.5 | 0.00036 | 0.77 | 9.4 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 8 | LRR_1 | 281 | 298 | 7.0e-16 | 55.8 | 0.11 | 220.0 | 2.5 |
| pfu_aug2.0_812.1_07914.t1 | 6 | 5 | LRR_8 | 314 | 362 | 1.8e-35 | 120.5 | 7.4e-09 | 1.6e-05 | 24.5 |
| pfu_aug2.0_812.1_07914.t1 | 8 | 6 | LRR_4 | 316 | 341 | 2.6e-20 | 71.5 | 0.0075 | 16.0 | 5.2 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 9 | LRR_1 | 328 | 347 | 7.0e-16 | 55.8 | 0.17 | 360.0 | 1.8 |
| pfu_aug2.0_812.1_07914.t1 | 8 | 7 | LRR_4 | 332 | 370 | 2.6e-20 | 71.5 | 1.9e-06 | 0.004 | 16.7 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 10 | LRR_1 | 352 | 372 | 7.0e-16 | 55.8 | 6.9e-05 | 0.15 | 12.2 |
| pfu_aug2.0_812.1_07914.t1 | 6 | 6 | LRR_8 | 362 | 409 | 1.8e-35 | 120.5 | 1.8e-09 | 3.8e-06 | 26.5 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 11 | LRR_1 | 376 | 395 | 7.0e-16 | 55.8 | 0.01 | 21.0 | 5.6 |
| pfu_aug2.0_812.1_07914.t1 | 8 | 8 | LRR_4 | 376 | 410 | 2.6e-20 | 71.5 | 3.9e-08 | 8.4e-05 | 22.1 |
| pfu_aug2.0_812.1_07914.t1 | 12 | 12 | LRR_1 | 398 | 409 | 7.0e-16 | 55.8 | 0.03 | 63.0 | 4.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_812.1_07914.t1 | gi|524864148|ref|XP_005088912.1| | PREDICTED: leucine-rich repeat-containing protein 40-like [Aplysia californica] | 3.0e-27 |
| pfu_aug2.0_812.1_07914.t1 | gi|676436379|ref|XP_009047863.1| | hypothetical protein LOTGIDRAFT_186050 [Lottia gigantea] | 6.0e-27 |
| pfu_aug2.0_812.1_07914.t1 | gi|490603127|ref|WP_004468147.1| | hypothetical protein [Leptospira santarosai] | 2.0e-23 |
| pfu_aug2.0_812.1_07914.t1 | gi|148228589|ref|NP_001089881.1| | leucine-rich repeat containing G protein-coupled receptor 4 precursor [Xenopus laevis] | 2.0e-22 |
| pfu_aug2.0_812.1_07914.t1 | gi|738089400|ref|WP_036048051.1| | hypothetical protein, partial [Leptospira borgpetersenii] | 2.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_812.1_07914.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_812.1_07914.t1 atggtactgtcatattttttgtgcattttgctatcttttctccaggtgtgcatttgtaccaatacggtcaaatctgactg gccgtgcctgtttgcaaagccatgtacatgtgactatgtcagaagaggggtagattgtacaaacaatgggctaaatggaa ttccatcttatattaactacattgatggaccttggcacatggacttcagtaataataatcttaccacattaccaaagaga gcatttggaaatatgacagtatcatccctgatattatcaaacaataagcttcaggcaatcgaagacggtgcgctggaagg aagtgaggattccatatattcgatttatctggacggaaattcgctggaactggtaccaaaagaagtaggaaaactacaaa aactgaccgagatctatctcgatcgaaatcctttgaaaacattagacgaagtggttttcaaaaacatatcagacaaactc agcacgattgtgtttggatcacaagacatgacagaatggccaaatgcagtaagtctgttacataatctgtacgatatgac aataaaaaacactgcgtttgaaactattccagacgacgcattttcgtcattgaagaacattttcgatcttaccttaacat caacgagcgtacgagcactcccaacatcactgcagcatacaagactattcaaacttactctaaatggcaataaaaatcta cgtgaaaatggatttcctccagctgcctttaaaaaccagactgaattccgtcaattttacatcaacgatggtgcactgga aacgcttcctccgatatttgcggagatgcccgtgcttgctgtattcgatttgacaaatactcctctgaggtacattaatg acagcgtcttcccgaagaacttcagtaacatatttttcgaattcagcagcaagcattccttttttactggcatcccgcca attttgtcaaaaacctcatctctttcaaacatctttttgaacaataacacgatccagtacataaatgatacagacttcac aggaaacaaccagttgtttgagcttgatctttcaggaaatcccataactgaagtatccattgacgcattcaagcataact ctggcttgtacgaacttcatctcgacaacacagaactaacaactatacctaaagcaatacagaacccaaacaaactcaga gaactccatttatctaacaccaagatagcatgtacctgtcagaacttaggatggatgaaatattggaccaagagaacaga aaactttgaaatctacgggaactgttacaatagtgatatgactttttcagattacttgaaaaacgagattcccaaatgtt ga |
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Protein
| Protein ID | pfu_aug2.0_812.1_07914.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_812.1_07914.t1 MVLSYFLCILLSFLQVCICTNTVKSDWPCLFAKPCTCDYVRRGVDCTNNGLNGIPSYINYIDGPWHMDFSNNNLTTLPKR AFGNMTVSSLILSNNKLQAIEDGALEGSEDSIYSIYLDGNSLELVPKEVGKLQKLTEIYLDRNPLKTLDEVVFKNISDKL STIVFGSQDMTEWPNAVSLLHNLYDMTIKNTAFETIPDDAFSSLKNIFDLTLTSTSVRALPTSLQHTRLFKLTLNGNKNL RENGFPPAAFKNQTEFRQFYINDGALETLPPIFAEMPVLAVFDLTNTPLRYINDSVFPKNFSNIFFEFSSKHSFFTGIPP ILSKTSSLSNIFLNNNTIQYINDTDFTGNNQLFELDLSGNPITEVSIDAFKHNSGLYELHLDNTELTTIPKAIQNPNKLR ELHLSNTKIACTCQNLGWMKYWTKRTENFEIYGNCYNSDMTFSDYLKNEIPKC |
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