Gene
| Gene Model ID | pfu_aug2.0_819.1_31189 |
|---|---|
| Locus | scaffold819.1 : 178780 ... 187345 : - |
| To GenomeBrowser | scaffold819.1:178780..187345 |
| Genes list of scaffold | scaffold819.1 |
| Synonym | pfu_aug1.0_115628.1_28233 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_819.1_31189.t1 | 1 | 1 | TFIIE_alpha | 16 | 122 | 3.5e-23 | 81.1 | 1.8e-26 | 6.7e-23 | 80.2 |
| pfu_aug2.0_819.1_31189.t1 | 3 | 1 | TFIIE-A_C-term | 216 | 246 | 5.4e-13 | 48.7 | 0.11 | 410.0 | 1.0 |
| pfu_aug2.0_819.1_31189.t1 | 3 | 2 | TFIIE-A_C-term | 379 | 452 | 5.4e-13 | 48.7 | 1.4e-16 | 5.4e-13 | 48.7 |
| pfu_aug2.0_819.1_31189.t1 | 3 | 3 | TFIIE-A_C-term | 582 | 588 | 5.4e-13 | 48.7 | 3.0 | 11000.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_819.1_31189.t1 | gi|410897225|ref|XP_003962099.1| | PREDICTED: general transcription factor IIE subunit 1 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_819.1_31189.t1 | gi|658839214|ref|XP_008401194.1| | PREDICTED: general transcription factor IIE subunit 1 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_819.1_31189.t1 | gi|617456285|ref|XP_007570400.1| | PREDICTED: general transcription factor IIE subunit 1 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_819.1_31189.t1 | gi|524880890|ref|XP_005097103.1| | PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_819.1_31189.t1 | gi|632980196|ref|XP_007906897.1| | PREDICTED: general transcription factor IIE subunit 1 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_819.1_31189.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_819.1_31189.t1 atggagcctgaggtactgacagaggttccacagacattaaaacgtttaatacggctcataacgagaggattctatggaat ggaacatgccatcatcattgacttgttagtgcggaatccctgtatgaaagaagatgacatggtcgaaattcttcagtttg accgaaaacaaatgagagctatgatcaacacattaaagacggaaaagtttctaaagaccagaatgcgcgtggaaactgat gccgaagggaaagcaacaaggcataattattatttcattaactatctagtgtttgtgaatgtggtgaggtataaattgga tcatgttcggagaaagatcgagttagaggagagagacaacacaagcagggcatcgtttcgctgcccaagttgtgagaaaa ctttcacagatttggaagtgaatgatttgtttgatttcatgagtcagactttccgctgtacacattctaaattcaatgaa aagatgcagcctatatatgatctcttgaaagaatgtgacgatataaaactagctccggagttgatggaacctgaacctac agacattagacacacatcaagatctcattccaataagacgtctaatgctgagagagaggaagcttggtccaagaagagag gtgctgaatacaacatgaaggatacatcaatcacaatctccatggatacagaagatacaaataaagctgaggatgtcaaa gaacaaccaatatggatgctggaaagtaccgtcgatggtgctgtagatgattctagggtacacaggctttctttctgtca tcataatcccagagctcatgaaaaagtatcagttttaccggatttgcctatgaaaaaattatttggtccgataaaagctc acgttgtatccattatttggactgataaaaattcccaaatatccgacatttcattggaaaatttcaagaactctgttatc ctgtggctgaacatttttgagttgctaatgatgtctgggttgtcagagtccacaactacatctaaagcagagacattcag taaagctgatgtaaacgagatctcgacattgttatatattcatgagaagaaaggttcaggtgctggagctataccagggc agaacgaggaggaatccagcagtgactccgaggatgaaacatcaagaaagagtgctacacttggcagggatgtggaagaa atggagagtgaagatgaagaagatgctgttcccatggtaacggttaatggcaagaaactttcatatcatgatgttacaag tgatatggtctcccagatgacacccagagaaaaagatgaatacataagaataggacaggaaatgtaccagaatatctcat ctaatatagagattgaactatttgacttctgtctctttgttcgtaaatccatctgcaaatctcctgagaaaccacatgga ggattttatgaaacttggtatacacagagctctagaggccatttactaagctgttctattaataaagatcctttcagagg tcgagcacctcaaaaggctacatttattccaactgtgaattcggtgcagatttacaaaggaggacttaagcaggaaactt taaaggaaatatctcgcactggattttgtttgagtcatgatgcaacactcaatgcaataaacagattaggaaatgaattt gacaatgcagcaaaaacttatgaagagacatcagacttggaaattgtagcctcaattcaggactcggactctgagtcaga atctgctttgtcgtgtcaagaggaagatgaaacggacctagcatga |
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Protein
| Protein ID | pfu_aug2.0_819.1_31189.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_819.1_31189.t1 MEPEVLTEVPQTLKRLIRLITRGFYGMEHAIIIDLLVRNPCMKEDDMVEILQFDRKQMRAMINTLKTEKFLKTRMRVETD AEGKATRHNYYFINYLVFVNVVRYKLDHVRRKIELEERDNTSRASFRCPSCEKTFTDLEVNDLFDFMSQTFRCTHSKFNE KMQPIYDLLKECDDIKLAPELMEPEPTDIRHTSRSHSNKTSNAEREEAWSKKRGAEYNMKDTSITISMDTEDTNKAEDVK EQPIWMLESTVDGAVDDSRVHRLSFCHHNPRAHEKVSVLPDLPMKKLFGPIKAHVVSIIWTDKNSQISDISLENFKNSVI LWLNIFELLMMSGLSESTTTSKAETFSKADVNEISTLLYIHEKKGSGAGAIPGQNEEESSSDSEDETSRKSATLGRDVEE MESEDEEDAVPMVTVNGKKLSYHDVTSDMVSQMTPREKDEYIRIGQEMYQNISSNIEIELFDFCLFVRKSICKSPEKPHG GFYETWYTQSSRGHLLSCSINKDPFRGRAPQKATFIPTVNSVQIYKGGLKQETLKEISRTGFCLSHDATLNAINRLGNEF DNAAKTYEETSDLEIVASIQDSDSESESALSCQEEDETDLA |
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