Gene
| Gene Model ID | pfu_aug2.0_819.1_31191 |
|---|---|
| Locus | scaffold819.1 : 208187 ... 222889 : - |
| To GenomeBrowser | scaffold819.1:208187..222889 |
| Genes list of scaffold | scaffold819.1 |
| Synonym | pfu_aug1.0_131314.1_06523 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_819.1_31191.t1 | 3 | 1 | SYF2 | 45 | 74 | 4.7e-33 | 114.4 | 0.17 | 2600.0 | -1.6 |
| pfu_aug2.0_819.1_31191.t1 | 3 | 2 | SYF2 | 76 | 142 | 4.7e-33 | 114.4 | 3.8e-18 | 5.6e-14 | 52.5 |
| pfu_aug2.0_819.1_31191.t1 | 3 | 3 | SYF2 | 143 | 192 | 4.7e-33 | 114.4 | 5.4e-25 | 8.0e-21 | 74.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_819.1_31191.t1 | gi|524910630|ref|XP_005110190.1| | PREDICTED: pre-mRNA-splicing factor syf2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_819.1_31191.t1 | gi|51010965|ref|NP_001003437.1| | pre-mRNA-splicing factor syf2 [Danio rerio] | 0.0 |
| pfu_aug2.0_819.1_31191.t1 | gi|60688494|gb|AAH91556.1| | Syf2 protein [Danio rerio] | 0.0 |
| pfu_aug2.0_819.1_31191.t1 | gi|676490337|ref|XP_009065236.1| | hypothetical protein LOTGIDRAFT_184158 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_819.1_31191.t1 | gi|213513469|ref|NP_001133812.1| | pre-mRNA-splicing factor syf2 [Salmo salar] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_819.1_31191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_819.1_31191.t1 atggaagcacaaccatcatgtagctctggtacaggcagtgccaaggccaaatttgacagaataaacagactgagggattt acagcttcgaatgaatgaagctcgaaagttgaatcaccaagaggtagtagaagaagacaagaggaataaattacctgcca acttcgaacagaaaaggaaacgtgtagagtatgaggaggaacaggatagaaagagaaaggaagctgaggataagggtgag gattatgatcgtgtgaagttactggaggtaggagccgatgaagcagaaagatgggagaagaaaaagaagaagaaaaatgc agatcctggattctcagattacgaatcagccactcaacgtcagtatcagagattgaccaaacagatgaaaccagatcatg ataattataaacgacaaagagataaaataattgagaagagggagaagtacagtcgtagacgaacatttgatgaggatgct gacatagactatatcaatgatcgtaatatgaagttcaacaagaagttagaacgtttctatggaccgtacacggcagaaat caaacagaacttagagagaggaactgccgtgtga |
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Protein
| Protein ID | pfu_aug2.0_819.1_31191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_819.1_31191.t1 MEAQPSCSSGTGSAKAKFDRINRLRDLQLRMNEARKLNHQEVVEEDKRNKLPANFEQKRKRVEYEEEQDRKRKEAEDKGE DYDRVKLLEVGADEAERWEKKKKKKNADPGFSDYESATQRQYQRLTKQMKPDHDNYKRQRDKIIEKREKYSRRRTFDEDA DIDYINDRNMKFNKKLERFYGPYTAEIKQNLERGTAV |
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