Gene
| Gene Model ID | pfu_aug2.0_82.1_06894 |
|---|---|
| Locus | scaffold82.1 : 155926 ... 191320 : + |
| To GenomeBrowser | scaffold82.1:155926..191320 |
| Genes list of scaffold | scaffold82.1 |
| Synonym | pfu_aug1.0_4024.1_23471 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| polypyrimidine tract-binding protein 2 isoform x1 | GO:0005634 GO:0006397 GO:0008380 GO:0044699 GO:0044822 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_82.1_06894.t1 | 4 | 1 | RRM_6 | 121 | 186 | 1.3e-23 | 82.7 | 8.2e-10 | 4.0e-06 | 26.6 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 1 | RRM_1 | 124 | 171 | 4.2e-23 | 80.7 | 5.8e-09 | 2.9e-05 | 23.6 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 1 | RRM_5 | 137 | 191 | 1.0e-37 | 127.7 | 2.2e-09 | 1.1e-05 | 25.2 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 2 | RRM_5 | 205 | 257 | 1.0e-37 | 127.7 | 6.3e-14 | 3.1e-10 | 39.7 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 2 | RRM_6 | 205 | 245 | 1.3e-23 | 82.7 | 0.0012 | 5.7 | 6.9 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 2 | RRM_1 | 205 | 247 | 4.2e-23 | 80.7 | 1.8e-05 | 0.09 | 12.4 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 3 | RRM_6 | 403 | 450 | 1.3e-23 | 82.7 | 3.4e-08 | 0.00017 | 21.5 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 3 | RRM_5 | 404 | 451 | 1.0e-37 | 127.7 | 4.3e-12 | 2.1e-08 | 33.8 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 3 | RRM_1 | 406 | 450 | 4.2e-23 | 80.7 | 3.7e-05 | 0.18 | 11.4 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 4 | RRM_6 | 471 | 518 | 1.3e-23 | 82.7 | 1.5e-08 | 7.2e-05 | 22.6 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 4 | RRM_1 | 471 | 528 | 4.2e-23 | 80.7 | 3.1e-10 | 1.5e-06 | 27.7 |
| pfu_aug2.0_82.1_06894.t1 | 4 | 4 | RRM_5 | 481 | 534 | 1.0e-37 | 127.7 | 1.6e-09 | 8.1e-06 | 25.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_82.1_06894.t1 | gi|524878213|ref|XP_005095795.1| | PREDICTED: polypyrimidine tract-binding protein 2-like isoform X9 [Aplysia californica] | 0.0 |
| pfu_aug2.0_82.1_06894.t1 | gi|524878217|ref|XP_005095797.1| | PREDICTED: polypyrimidine tract-binding protein 2-like isoform X11 [Aplysia californica] | 0.0 |
| pfu_aug2.0_82.1_06894.t1 | gi|524878215|ref|XP_005095796.1| | PREDICTED: polypyrimidine tract-binding protein 2-like isoform X10 [Aplysia californica] | 0.0 |
| pfu_aug2.0_82.1_06894.t1 | gi|637292896|ref|XP_008107428.1| | PREDICTED: polypyrimidine tract-binding protein 2 isoform X6 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_82.1_06894.t1 | gi|242023546|ref|XP_002432193.1| | Polypyrimidine tract-binding protein, putative [Pediculus humanus corporis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_82.1_06894.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_82.1_06894.t1 atgtatgtttgctattacacgtatcctggagcctctcatcaccagtcgccgctagctaccgccgctccccagcccctcgc cgctgcccctcagcctgctgccgtacccgccagcgagcctctcctcgtacccgttaccgccacacaagcactaccccagg cgctgacccaggctatccctcccgcctctctaacatccattccaatcactgtctgtagaaagagaccatcggacgaactc atgtctaactcgccaatggtgaccaatgggactggccttagtccacagcacgggtccaactccgacaatgatgctaaaaa ggtcaagctggacaaccaggtaaatggtccctccagggtggtgcacctccggagtctacccccagactgcacggaagccg acgtggtacaactgggtatgccctacggcaaaatgacaaacgttttactgctcaaacagaaaaatcaggctttcctggag ttccaagatgaacaatctgcttgtacaatggtcagctttcatcaacaaacgccagcctccattagggcacggcatgtcta tgtacagttttcaaaccacaaagaactcaaaacggaccaagcacattctctacagtttggaaaagtactgaagatgatca ttttcacaaaaaataacacattccaagctcttattcagatgtctgatccagtagcagcaaatgcagctaaattgtcccta gatggtcagaatatttacaatgggtgctgtacactaagaatagactattccaagctgaacaatttgaacgtcaaatataa taacgacaagagtcgagactttacaaatccaaacctcccgagcggtgatccaagcatagaccaaagtatgccattcggag acgctccagctttctcgaaagttgaaagtgaaatctgtagttatgaaaatgacggttacacagacagtaatcaaaactgt tctgtaaatagcgatgaaaataaaaacgtccttaacgcaggaccaattattaataaacgatcagaatcactttcaacaac aacatccagacgacccttgtgtagtatttgtgcctccgggatgatgacatcagcccttgtacctggcgtaggagcgacac cactaacggcttacggggcggccactgctgtgggaggtacaccagtctatgctcccaactttggaggcggcctggcaggt gagtcgatgtgtgtatatggggatgtacaccgggtgaagattttgttcaacaagaaagacaatgctctggtacaaatggc tgagccacatcaggcacagttagccattgcacatttagacaaagtgaaagtttggggtaaaaacatcagggttacacaat caaaacatgcacttgtacagatgcccaaagaaggtcaacctagatgcattaacgtcaaatccaatgtaacagaagaacta ttgaaagaagaattctcacaatatggagaagttaaagcttttaaatttttcccaaaagacagaaagatggcgttaataca gctggcaactgtagatgaggctgtcatgtccctcattgctatgcacaattatcctttaagtgacacaaaccatttgcgag tgcatagttaa |
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Protein
| Protein ID | pfu_aug2.0_82.1_06894.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_82.1_06894.t1 MYVCYYTYPGASHHQSPLATAAPQPLAAAPQPAAVPASEPLLVPVTATQALPQALTQAIPPASLTSIPITVCRKRPSDEL MSNSPMVTNGTGLSPQHGSNSDNDAKKVKLDNQVNGPSRVVHLRSLPPDCTEADVVQLGMPYGKMTNVLLLKQKNQAFLE FQDEQSACTMVSFHQQTPASIRARHVYVQFSNHKELKTDQAHSLQFGKVLKMIIFTKNNTFQALIQMSDPVAANAAKLSL DGQNIYNGCCTLRIDYSKLNNLNVKYNNDKSRDFTNPNLPSGDPSIDQSMPFGDAPAFSKVESEICSYENDGYTDSNQNC SVNSDENKNVLNAGPIINKRSESLSTTTSRRPLCSICASGMMTSALVPGVGATPLTAYGAATAVGGTPVYAPNFGGGLAG ESMCVYGDVHRVKILFNKKDNALVQMAEPHQAQLAIAHLDKVKVWGKNIRVTQSKHALVQMPKEGQPRCINVKSNVTEEL LKEEFSQYGEVKAFKFFPKDRKMALIQLATVDEAVMSLIAMHNYPLSDTNHLRVHS |
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