Gene
| Gene Model ID | pfu_aug2.0_82.1_06902 |
|---|---|
| Locus | scaffold82.1 : 408069 ... 443469 : - |
| To GenomeBrowser | scaffold82.1:408069..443469 |
| Genes list of scaffold | scaffold82.1 |
| Synonym | pfu_aug1.0_269857.1_57609 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_82.1_06902.t1 | 5 | 1 | Urb2 | 42 | 102 | 2.1e-13 | 50.3 | 0.076 | 1100.0 | -1.1 |
| pfu_aug2.0_82.1_06902.t1 | 5 | 2 | Urb2 | 211 | 281 | 2.1e-13 | 50.3 | 0.064 | 950.0 | -0.9 |
| pfu_aug2.0_82.1_06902.t1 | 5 | 3 | Urb2 | 1070 | 1111 | 2.1e-13 | 50.3 | 0.28 | 4200.0 | -3.0 |
| pfu_aug2.0_82.1_06902.t1 | 5 | 4 | Urb2 | 1301 | 1335 | 2.1e-13 | 50.3 | 0.13 | 1900.0 | -1.8 |
| pfu_aug2.0_82.1_06902.t1 | 5 | 5 | Urb2 | 1358 | 1434 | 2.1e-13 | 50.3 | 1.4e-17 | 2.1e-13 | 50.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_82.1_06902.t1 | gi|194042625|ref|XP_001927969.1| | PREDICTED: unhealthy ribosome biogenesis protein 2 homolog [Sus scrofa] | 3.0e-17 |
| pfu_aug2.0_82.1_06902.t1 | gi|507687773|ref|XP_004712255.1| | PREDICTED: unhealthy ribosome biogenesis protein 2 homolog [Echinops telfairi] | 2.0e-16 |
| pfu_aug2.0_82.1_06902.t1 | gi|471404058|ref|XP_004384189.1| | PREDICTED: unhealthy ribosome biogenesis protein 2 homolog [Trichechus manatus latirostris] | 3.0e-16 |
| pfu_aug2.0_82.1_06902.t1 | gi|504132644|ref|XP_004578934.1| | PREDICTED: unhealthy ribosome biogenesis protein 2 homolog [Ochotona princeps] | 4.0e-16 |
| pfu_aug2.0_82.1_06902.t1 | gi|591319693|ref|XP_007086066.1| | PREDICTED: unhealthy ribosome biogenesis protein 2 homolog isoform X1 [Panthera tigris altaica] | 5.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_82.1_06902.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_82.1_06902.t1 atgtttcgtgttgtagtagaccccaaaagggatgactatctggctttacaggcttttgttcagtctaggggtccaagact atatatacatgacttgatatcaaagattcaagatagatccaaaccaatcaagaagcgtgttaaatatataaagtcagcat ggatgtcagaagatgtcaatataccaaacaaagaagtattcctgattgatactctagttggatatctcctcaataagaaa aaaaaagaaatcacagaggaggaaaatgcatacatttggaaatatttgtgcaaaatcctcagttcagagagagtcatcac actatcaagagatggtcaagacctgcaagttaagccatcattatcccagaaaaatgaatctgttgccatgtacatgatgt atgatttcggtatagaggaatctcggtctcagatgatatgcagaaacaacatgtatctcaaccacggcttatgcctcggt tgtgataagagcagcctactccatgctgtattagtggtgacagtacagtcggtacaggacaacaaggacctaccaacatc atgtataaacctgctgaacttactgtgtgtggagtatcagatagtcctcaaggaatgtgaggacattaaaaaggcactta agaatgtgacaagtagacttatggttccgatcctcactttatgctggctgacatcagaggacagatctgacaacctgagg ccttcctcaacaatcctcatcacaacactggaaaatgtcatatttgagaatcatgaagacaatctgtcttatgcacacaa aatgacgctgtacctgctcaagatgattggtatgaacctggaagattccacttgttctttgagggatcaggataaccagg tccttaaaacggtgtaccagcttcttaagacagtacatgagctgaatctgtaccaggtagcacttgataacgctagtgac gcagtccagctcaagtcgtacaggtcactactggatgtgatactcaatatgcagagatgtcagtggttttatggatgcct tgagatgtttctgagtttaaatcatctgataatggagcccaggatgtcagatgtattaagatatgcttggctcagaccta ccacatggggtctagaaagtgatgtcagtacagccttaggtggctttctttccactttggtcaaaacatactctaagctg cgacactggataaagtggctggattttgtattcttagcgatatctcagtcagacaacacaggacaggttctttttcctga ttcctttattactagctttggggagtgcatggtacttctaccacagactttaatgatagagatgtggcagaaattcttag atgggatcaagtcaaagtacctaccaaatctgatgtcatccaaggaagatgatgttatcaaggcacaactgttcatagtg attgagcttttcacaagttatctgtcctttataagggtagcagattatactgttactgctcaaactaaaaatcaggtcaa gctcaaactcagactggaggccacaggagatgaggtcattattccactattagattctgccatacagttacagagttgtg atttgctgttggtagttttgactcttttcgacacgttcggagagctgtgcttgctgttggctaggtatacaggccacaat gtctgtgtattaacagaagctgcattgtccagggatgtttatcctggctgtctgttgcccagtctctctactgatacatg gaaacatgtagagaaatttgtgaacaaggaaaaggactataaacttttggctcaattgagacgtctagattttcttactt tacgtgccatgcttataactaacccggccaggaatggggagttgagctcaacactcaatgaacttgcaaaaaagtgtgta tcatcacccccagttgataagagactagaggactgggatggaaagataaataacataagcaagcatacataccctacagc tgagtgtgccctcgccatccaagctctacctgtatgtgctgccatcctacagccatctgatctccaagatcttgtccaat ttattttacaacgtggtattaccatatgcaacttacaaaaatctacacaggatttgttgagtttttcagggattataaca gattatcctaacctacaaagctgtatactgacttcaagcttacaggtactggcaggcatactgtctccttgttttgaacc atcaaagaggaagaagaggagaggaatcctttcacacagtatggaacttatagacactcttgctgtaaccaatgttaact ggacaatgactgacataaatggactggcagaggagagtcttcattcagctttccagtcactacatcagataatagctgta catgatcaggttgatatgcacatgggtactttattacagacaatcgtcaagacttacaatgtactttccatttgtcagca catccggagcttaccattggcccacctttctgaggcagagaagttacgttctgtactcacagtatctctgagtcttcacc tgcttacagtatcacagccgtacgaaggtgaccagacgcaagagatcagcggatctggaattgtcgaggattgtgtgaag gccttggctatagtcctacagtcctgtcacaaatcatcgttatgtaagcttgtacagatggagaaatatctcagctggat gatgtatctgtacagctggtctcaggatagaggacacaatcattacatgttggagttgttaattaaggtgacctgtaaga tagctgttacagacaaagactgccttacaacactatatcaaatactggataaattagtagtttgtacagagaatataagc agccagttaacaatagaaacggaagccaaattgctcgttctttccacattttaccaagaattatgtaggtgtgtagaaaa gaagattgatgcattatgtcttgtgaatattctataggaactgaaagctaagttgatagaagcccgtaaagaggattctt caaaaaaagaaaacggagaagatgatagggaggaggataatggaaagaaagataaaattaatggagatattgcaatggag gttgattcagagtcggaagatattgattctgggtcaacaacaggtggcgatagtaaaaaaagtgacaatgtgtccctggt tgttaaccaaaaaagtaaggatgcaaaagagaagggaaaatctgagaaagtcaataccaataaagaaaatgatagttctt taaaatcatggaaaaaagtcatccatgaaatgtgtactgagagaaacaaagtgaaggcaaaaaagttgatagacattctt ctaaatgaaatgagcggggaagatttgttggggtacggtagtacagaggatgaggaagatgaagttacaggggattggcg gacatacagagagacgctgattgcagatggacggtatcaggaggagggtaacaaggtggtcaggatgatgacgcacaagg cagttatctcccttatagtatcccttgatacagaggaattccaaacggcagtagtcagcattataatgagcacgacagcg aggacattggtatcaggatcaataaccagggtacatgaggctttatgtatgtggtgtagactattacaaagtgacgtacc agaggagaagaagaaaatcctcaagtttagttctggggaggtaaagtctatgtttatatgtaatagtgatcctatggtgt tgactaactccattgccgttctgaagtgtctatctcaagcagagcaaatcccgcctgtcaggaaattggttattcatgtg ctaaaaaccaccgccaagatgctctcttatcgtgaggatgtggtagacagtgagtcagccagtctctgcctacagtgctg taaggatgtacacctacacggagaggcgtacctggatatcttcacggccatttataaagtggtggataactatatactct tccgtacaacgtcggctctggataattacctagagttcctacagttgtatggaacaatcatggaacacaggaatgtcttt tctaagcagcttgtccagatcattgaaaattacataactgaagtccaaaaggtcactctgcacccagaggtcaagagggc attggtacctgccatgtacaaagtgctacagttcctcaacaagcatgccaaggagattctcaggaagaggctcaaagtag aggctcgggagctcttcagagccttgtatgccgattacgagacctacttcaagtacactggtactgtctga |
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Protein
| Protein ID | pfu_aug2.0_82.1_06902.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_82.1_06902.t1 MFRVVVDPKRDDYLALQAFVQSRGPRLYIHDLISKIQDRSKPIKKRVKYIKSAWMSEDVNIPNKEVFLIDTLVGYLLNKK KKEITEEENAYIWKYLCKILSSERVITLSRDGQDLQVKPSLSQKNESVAMYMMYDFGIEESRSQMICRNNMYLNHGLCLG CDKSSLLHAVLVVTVQSVQDNKDLPTSCINLLNLLCVEYQIVLKECEDIKKALKNVTSRLMVPILTLCWLTSEDRSDNLR PSSTILITTLENVIFENHEDNLSYAHKMTLYLLKMIGMNLEDSTCSLRDQDNQVLKTVYQLLKTVHELNLYQVALDNASD AVQLKSYRSLLDVILNMQRCQWFYGCLEMFLSLNHLIMEPRMSDVLRYAWLRPTTWGLESDVSTALGGFLSTLVKTYSKL RHWIKWLDFVFLAISQSDNTGQVLFPDSFITSFGECMVLLPQTLMIEMWQKFLDGIKSKYLPNLMSSKEDDVIKAQLFIV IELFTSYLSFIRVADYTVTAQTKNQVKLKLRLEATGDEVIIPLLDSAIQLQSCDLLLVVLTLFDTFGELCLLLARYTGHN VCVLTEAALSRDVYPGCLLPSLSTDTWKHVEKFVNKEKDYKLLAQLRRLDFLTLRAMLITNPARNGELSSTLNELAKKCV SSPPVDKRLEDWDGKINNISKHTYPTAECALAIQALPVCAAILQPSDLQDLVQFILQRGITICNLQKSTQDLLSFSGIIT DYPNLQSCILTSSLQVLAGILSPCFEPSKRKKRRGILSHSMELIDTLAVTNVNWTMTDINGLAEESLHSAFQSLHQIIAV HDQVDMHMGTLLQTIVKTYNVLSICQHIRSLPLAHLSEAEKLRSVLTVSLSLHLLTVSQPYEGDQTQEISGSGIVEDCVK ALAIVLQSCHKSSLCKLVQMEKYLSWMMYLYSWSQDRGHNHYMLELLIKVTCKIAVTDKDCLTTLYQILDKLVVCTENIS SQLTIETEAKLLVLSTFYQELCRCVEKKIDALCLVNILXELKAKLIEARKEDSSKKENGEDDREEDNGKKDKINGDIAME VDSESEDIDSGSTTGGDSKKSDNVSLVVNQKSKDAKEKGKSEKVNTNKENDSSLKSWKKVIHEMCTERNKVKAKKLIDIL LNEMSGEDLLGYGSTEDEEDEVTGDWRTYRETLIADGRYQEEGNKVVRMMTHKAVISLIVSLDTEEFQTAVVSIIMSTTA RTLVSGSITRVHEALCMWCRLLQSDVPEEKKKILKFSSGEVKSMFICNSDPMVLTNSIAVLKCLSQAEQIPPVRKLVIHV LKTTAKMLSYREDVVDSESASLCLQCCKDVHLHGEAYLDIFTAIYKVVDNYILFRTTSALDNYLEFLQLYGTIMEHRNVF SKQLVQIIENYITEVQKVTLHPEVKRALVPAMYKVLQFLNKHAKEILRKRLKVEARELFRALYADYETYFKYTGTV |
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