Gene
| Gene Model ID | pfu_aug2.0_824.1_14582 |
|---|---|
| Locus | scaffold824.1 : 1204 ... 13365 : - |
| To GenomeBrowser | scaffold824.1:1204..13365 |
| Genes list of scaffold | scaffold824.1 |
| Synonym | pfu_aug1.0_403.1_36540 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nudc domain-containing protein 1-like | GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_824.1_14582.t1 | 2 | 1 | CS | 193 | 207 | 1.7e-16 | 60.5 | 0.95 | 14000.0 | -3.4 |
| pfu_aug2.0_824.1_14582.t1 | 2 | 2 | CS | 259 | 333 | 1.7e-16 | 60.5 | 3.4e-20 | 5.1e-16 | 58.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_824.1_14582.t1 | gi|524888468|ref|XP_005100805.1| | PREDICTED: nudC domain-containing protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_824.1_14582.t1 | gi|676468831|ref|XP_009058335.1| | hypothetical protein LOTGIDRAFT_122249 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_824.1_14582.t1 | gi|72088711|ref|XP_795347.1| | PREDICTED: nudC domain-containing protein 1 isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_824.1_14582.t1 | gi|573895917|ref|XP_006635701.1| | PREDICTED: nudC domain-containing protein 1-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_824.1_14582.t1 | gi|589931926|ref|XP_006978765.1| | PREDICTED: nudC domain-containing protein 1 isoform X2 [Peromyscus maniculatus bairdii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_824.1_14582.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_824.1_14582.t1 atggaggcacgatcatcgttgccgattcggcgtgaattgattgatgcaaagtttgaaggctacaaattgtctctggattg tttaccaacttaccaatgtagtttagaatctgtgttagatgtaaccagtttgagtgaggatcagtactccttccatcatg ctaaactacttggcgttcataatcacctgatacaggatccatggtgtaacaaacatgtatactttgtatcatccgattgg tttattgtcaaagctatgactacaatgtcatctgtgcagattgatggcagggtggtacagattccagattcggccataca aagagaggtgattggtcgtcatgaggtcacgatggtgtttgtatccccagatttagcagttgtatcagacggagccggca aacttcatgtttacttcacaggggatagacaaagctcagcagaaaaatggaaggtactgttttcattggatcctgttgat gggaaagctccattctcattggttgattccttgatgacatcagacaacggtactacctacattgattgtctttgtgcata tgtgattgagtcaaatcaggaccaaaaagaaaaattcaagtccaatcacctgtctgttatagattgggtaaccattgtct ccagtgatcagaagtcctggaaacaggagagaagtagacagttgctagggagacgaccatttgattatgttgccatggac tccaatcagagtgttgtcatagcagcaccttcagcattcaaagaatcggcattaccagagtatacatggtgccaggagag tgaggatattaccgtacagtttaccgtccctgctggtatgaccaaggcagatatctatctcgcactgacatctgaccata tagactttggtataaagaatggtaaagctttactgaaggggcacttacatggaccagtagatgtagagggcagcacatgg actatacaggaacagagagtggagttgaccttgaccaagcttaaccaggaggtgtggcctgtagttgttgtaggggacca cagaggggagatgactctggatcaagcacagattgctgaaattcataatagattagcaggtctcacgtcagaacagttga acccagctcctgaccctgaggttaacaagccgtataatgcccaggaactagaggactgtgatgctttccctgatgatagc tccatggtaaccagaatagatggaaactcgcacaaggtcacacaccaaaccaaccttggaagtcaccagttcctgtttac gactcgtgtatcccatgatgcaccaagtgtgttttgtttacgtcatgatgtagatggcttagtttggcaaccagcaaaaa ctgtcaaagagcatgattcaccatggcaacatgtggcaaccttcaatgcttttggttatgtgcaggcatcaaaacaacag aggaaattctgtgcctgtagttcggacttttcatacgtagctatttgtgatgcagtaagacactgttatatttaccgcca accaacagctgttttatctcctgtcagaaacagaaagactggacaacaaataaatacggttgccaagcaacaagttgttt ccttagaatcagcagacagtgttgtgggtctccatgcaacacatacaaaactctttatactgacaacttctaaattatat gctgttcaggtcaatcctgaaactgtttaa |
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Protein
| Protein ID | pfu_aug2.0_824.1_14582.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_824.1_14582.t1 MEARSSLPIRRELIDAKFEGYKLSLDCLPTYQCSLESVLDVTSLSEDQYSFHHAKLLGVHNHLIQDPWCNKHVYFVSSDW FIVKAMTTMSSVQIDGRVVQIPDSAIQREVIGRHEVTMVFVSPDLAVVSDGAGKLHVYFTGDRQSSAEKWKVLFSLDPVD GKAPFSLVDSLMTSDNGTTYIDCLCAYVIESNQDQKEKFKSNHLSVIDWVTIVSSDQKSWKQERSRQLLGRRPFDYVAMD SNQSVVIAAPSAFKESALPEYTWCQESEDITVQFTVPAGMTKADIYLALTSDHIDFGIKNGKALLKGHLHGPVDVEGSTW TIQEQRVELTLTKLNQEVWPVVVVGDHRGEMTLDQAQIAEIHNRLAGLTSEQLNPAPDPEVNKPYNAQELEDCDAFPDDS SMVTRIDGNSHKVTHQTNLGSHQFLFTTRVSHDAPSVFCLRHDVDGLVWQPAKTVKEHDSPWQHVATFNAFGYVQASKQQ RKFCACSSDFSYVAICDAVRHCYIYRQPTAVLSPVRNRKTGQQINTVAKQQVVSLESADSVVGLHATHTKLFILTTSKLY AVQVNPETV |
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