Gene
| Gene Model ID | pfu_aug2.0_825.1_17865 |
|---|---|
| Locus | scaffold825.1 : 113016 ... 131767 : + |
| To GenomeBrowser | scaffold825.1:113016..131767 |
| Genes list of scaffold | scaffold825.1 |
| Synonym | pfu_aug1.0_245.1_50748 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| poly -binding-splicing factor half pint isoform x1 | GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_825.1_17865.t1 | 3 | 1 | RRM_1 | 121 | 191 | 1.4013e-43 | 146.3 | 3.5e-23 | 1.0e-19 | 69.8 |
| pfu_aug2.0_825.1_17865.t1 | 3 | 1 | RRM_6 | 121 | 191 | 2.8e-30 | 104.0 | 4.8e-16 | 1.4e-12 | 47.3 |
| pfu_aug2.0_825.1_17865.t1 | 3 | 1 | RRM_5 | 136 | 192 | 2.4e-25 | 88.1 | 7.8e-13 | 2.3e-09 | 36.9 |
| pfu_aug2.0_825.1_17865.t1 | 3 | 2 | RRM_1 | 218 | 288 | 1.4013e-43 | 146.3 | 2.5e-17 | 7.4e-14 | 51.1 |
| pfu_aug2.0_825.1_17865.t1 | 3 | 2 | RRM_6 | 218 | 289 | 2.8e-30 | 104.0 | 6.9e-14 | 2.0e-10 | 40.4 |
| pfu_aug2.0_825.1_17865.t1 | 3 | 2 | RRM_5 | 235 | 290 | 2.4e-25 | 88.1 | 4.7e-09 | 1.4e-05 | 24.8 |
| pfu_aug2.0_825.1_17865.t1 | 3 | 3 | RRM_6 | 507 | 568 | 2.8e-30 | 104.0 | 3.8e-05 | 0.11 | 12.4 |
| pfu_aug2.0_825.1_17865.t1 | 3 | 3 | RRM_1 | 508 | 568 | 1.4013e-43 | 146.3 | 5.5e-08 | 0.00016 | 21.2 |
| pfu_aug2.0_825.1_17865.t1 | 3 | 3 | RRM_5 | 512 | 569 | 2.4e-25 | 88.1 | 2.2e-08 | 6.4e-05 | 22.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_825.1_17865.t1 | gi|676494054|ref|XP_009066437.1| | hypothetical protein LOTGIDRAFT_108708 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_825.1_17865.t1 | gi|524871887|ref|XP_005092714.1| | PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_825.1_17865.t1 | gi|524871889|ref|XP_005092715.1| | PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_825.1_17865.t1 | gi|759041763|ref|XP_011329714.1| | PREDICTED: poly(U)-binding-splicing factor half pint isoform X1 [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_825.1_17865.t1 | gi|665796430|ref|XP_008546005.1| | PREDICTED: poly(U)-binding-splicing factor half pint isoform X1 [Microplitis demolitor] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_825.1_17865.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_825.1_17865.t1 atggcgaacgttgggtttgacgcacagattcctcacataaacgggaacggagcaatggatgatagccctgaactgaagaa gataaagttagagtcggacaattttatagaggccggtatacaagctgaccaacatggaccgttattggagggacccggtg ccaagagggaccaaaaaccgttcgtcctccccaaactcagctcatctcaacaagaactcatacagaaagccaagaaatac gctatggaacagagcatcaaaagtgtactggttagacaaaccatagctcatcagcaacagcaaatgcagaatttccaaaa tacagttcaaaggcagcaagctttagccttgatgtgcaggatatatgtgggcagtattaactttgaaatcaaagaagaca caataaagcaagcctttcttccatttggacctatcaagagtgtgaacttatcatgggacccagtgactaacaaacataaa ggatttgcctttatagagtatgatataccagaggcggctcagctagctctggaacaaatgaatggggtcatgattggagg aagaaatattaaggttggccgacccagcaacatgccacaggcccaacccatcatccaggcattagcagccgaagccaaaa acagaaacagaatctatatagcctccatacaccaggatctcacagaaaatgatattcaaagtgtttttgaagcttttgga aagatcttgaattgtaaactggaacaggacagtacaaagcctggaaaacacagggggtatggcttcatggagtacgaaac tgcacaaggagcattagatgctgtacagtctatgaacttgtttgacttgggaggacaatatcttagagttggaaaggcta taactcctccagatgcacttcagccatcagccggtcccagtaccctacctacagccgctgctgtggcggccgctgctgtt actgctaaaataaccgcaatggatgctcaggaacagatcaaagctttggcaccacctggtatagctgtacctaccagcct tggagagaagtctttaccttcatcagtagccacacccccaggaggaaactcacctaagtttatcccacctgctgcccctc cccctgtacctgtaggggtggtagtcccacagctaggaggggcaggagttgttgccccagtgtctttaggaggtattccc atgccaatgcctgctgtacaaccccctccacctttacctgtatcaaatcaagtcaacagtctaccaggatccatgccaac agaaatccccttacccccaccaccaccccaggagaaggagaaagagaaggaaaaagaagataagaagaaagcatcggagg aagatccagcacagaccctggaccaacaagagaacatgaagatcagtggtagtaatgcaagacatatggtcatgcagaaa cttatgaggaagtcagagtgccgagtcatggttttacgtaatatggtgggtccagaagatttagatgatgaacttgaaaa tgaagtaacagatgaatgtggaaagtttggaaatgtaaaacgtgtcattatataccaagaaagacagagtgaagaagttg atgcggaaatcattgtcaaaatatttgttgaattcacacaacaatcagaactagaaaaagctgtttctgcattacatggt agatattttggaggtcgggttgttacggcagagaagtatgatgaagacatgtttaatgctaacgatttatcaggttga |
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Protein
| Protein ID | pfu_aug2.0_825.1_17865.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_825.1_17865.t1 MANVGFDAQIPHINGNGAMDDSPELKKIKLESDNFIEAGIQADQHGPLLEGPGAKRDQKPFVLPKLSSSQQELIQKAKKY AMEQSIKSVLVRQTIAHQQQQMQNFQNTVQRQQALALMCRIYVGSINFEIKEDTIKQAFLPFGPIKSVNLSWDPVTNKHK GFAFIEYDIPEAAQLALEQMNGVMIGGRNIKVGRPSNMPQAQPIIQALAAEAKNRNRIYIASIHQDLTENDIQSVFEAFG KILNCKLEQDSTKPGKHRGYGFMEYETAQGALDAVQSMNLFDLGGQYLRVGKAITPPDALQPSAGPSTLPTAAAVAAAAV TAKITAMDAQEQIKALAPPGIAVPTSLGEKSLPSSVATPPGGNSPKFIPPAAPPPVPVGVVVPQLGGAGVVAPVSLGGIP MPMPAVQPPPPLPVSNQVNSLPGSMPTEIPLPPPPPQEKEKEKEKEDKKKASEEDPAQTLDQQENMKISGSNARHMVMQK LMRKSECRVMVLRNMVGPEDLDDELENEVTDECGKFGNVKRVIIYQERQSEEVDAEIIVKIFVEFTQQSELEKAVSALHG RYFGGRVVTAEKYDEDMFNANDLSG |
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