Gene
| Gene Model ID | pfu_aug2.0_83.1_10234 |
|---|---|
| Locus | scaffold83.1 : 38207 ... 63465 : - |
| To GenomeBrowser | scaffold83.1:38207..63465 |
| Genes list of scaffold | scaffold83.1 |
| Synonym | pfu_aug1.0_71260.1_41927 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_83.1_10234.t2 | 2 | 1 | Bac_DNA_binding | 19 | 66 | 9.0e-07 | 28.8 | 1.0e-06 | 0.0031 | 17.5 |
| pfu_aug2.0_83.1_10234.t2 | 1 | 1 | DUF4496 | 26 | 162 | 7.40026e-42 | 142.5 | 4.2039e-45 | 1.40004e-41 | 141.6 |
| pfu_aug2.0_83.1_10234.t2 | 2 | 2 | Bac_DNA_binding | 108 | 155 | 9.0e-07 | 28.8 | 0.00076 | 2.2 | 8.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_83.1_10234.t2 | gi|72004899|ref|XP_787390.1| | PREDICTED: coiled-coil domain-containing protein 81 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_83.1_10234.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10234.t1 atgcaaggcattttggctgaggccaagaaaaacagatattccttaataaaggacacgttatctgaagacgatgtggccaa tgtctgggaaagtgtttccaacttcattgaaaaacaaatgtcacaggggaagggagtgggtattccatcactgggaactt tcaccttcactcaaaagaagcttgatatcggaaataataaattcatcatgatgcagaggccattgtttgtgttgtcagaa aaatttgctcaaactcacggattacagtacacaaaatatcatgtcccaggaacaataccagtggtacagttgaattttgc cgccatggcttttgagagtccattcgatcgtgacacagtagaaagttgtgtgaaggaaatcttaagtgcagtgtctcgtg ctgtcggagcaaagaaaaatgtagaattaacatttaacggcataggaagattaacaattagggattcacgtgtaaaaatg aggttctacaaggaatatattaatcagatggatggatctggaaaactgctggattccatgcaaaattttgtcttcagaaa tagtttatatgccaatggtagatatgttattcataccaaaatatcaaacaccagccttgcccctgggggaggtggattag ctcccgtggtggaggagggagatatagacaaccagattcctgaccccctagctccagtcaaccaactacaggagatgcag cccatggatacgtacgataatgatataatggaacttccacccccggcccctgtggaggatatcgtacagaacgaaggaat ggtggggatggaggttggtgacctagcgacatcagaggccatacgtcacattgaggaccgaggggaggggctgcctaaca ccatcagtgagaaggctctacagaccatcaacgtacctataacaggcgaactggatatcaacccagatcaagatgtggac agttatgttacggtagatcccgatagaaatattttgcccccgataggtgaacacctgaagaagcctcccagtgtggtacc tagtcgatcaggttctagaatggctatgcccctcgccaaggctaatggagtgagtctgttagacgaccttgtaccttcag tcctgacacccaaatctgccccatctcctggtctagggacactgcataaatctgcaccctcaccattcaataatgtcaca gaaggtgcccaacccagaatgtcagggtctcccaagctggccccattacagaggtcacatagtatgacagagatgcccga gaaagaggaaaagccagcagccccgcctaaatctgcctgcggtcaccccgttgcaggtcaggagctgtgctatttatgtc atcaacgagctcgacgtaatatccccgtgtcatttacggaggagaggaaacgcagagaggatgaggaagacaaattatta caacagttccagtacatgaaggatgctgaagacacgttagctcaacagaagcctcccagtgtggtacctagtcgatcagg ttctagaatggctatgcccctcgccaaggctaatggagtgagtctgttagacgaccttgtaccttcagtcctgaccccca aatctgccccatctcctggtctggggacactgcataaatctgcaccctcaccattcaataatgtcacagaaggtgcccaa cccagaatgtcagggtctcccaagctggccccattacagaggtcacatagtatgacagagatgcccgagaaagaggaaaa gccagcagccccgcctaaatctgcctgcggtcaccccgttgcaggtcaggagctgtgctatttatgtcatcaacgagctc gacgtaatatccccgtgtcatttacggaggagaggaaacgcagagaggatgaggaagacaaattattacaacagttccag tacatgaaggatgctgaagacacgttagctcaacaggagagagatttatctaagcgtcatgaccttcagaaaatggctgc ctttaacttgggtgtggcagaggcggtaactacaaagaagaaatccagagacacagaattccataaatcatacatattcc aaaggcgacctttaacaccaaacaggatatacaaacagcaggaatactctggtgatcttgccgtacaagtgaatgccaaa gaggaggtgaagaagaagcgcaaatctgatgaagatttcctggagcgattagagcaagtacagctggcagaggatttggc agcccagcgagaacagtaccttaaggacaagcaagatcagcaggatatgtacaaacaggcattagaagctcagatacata tacgtgataaattccgtaagcctgatggcctgttgagaacccccagccctccctccctcttccacagtcagcagttcgta gcagcgaaacctaagctctccacaagtcggcttagtttcaattctttctccctacccatgattcctaatgtcattcgacc gttcggagaatcttccagagaccgtttaaatgaggacctgaggagatattcagccaccaggctgcgattcaaacctctac aagtccctcccagggagccagataacgaggtgtttggaaagaacgatatgaccaatgagaaaatggctgctcgaaggagc caggcttttgatcttttccgagaacagcaggacttggtagcccagaaaaaacgggaggccatcttgaaacgcttaacaga gcaaaaagaagaggaggatgtactagatagaaccaaaaaggagctgcttgatgacagagccggtagatataaccgtcgta tgaatatgcgtaaacgcctcgagaacgactggatgtctgcggcacagcttaaacgtcaacgtgacatggaggagcgcctc cacctcctccagcctgccctcctcctacatgagcagtgtgataaatacaacaggtgcagccaatgtaaacggaagctcaa taattgtggggagtccaatatctggagcgagtccagatacattccaggatccagacttatggtgtaa |
|
| Transcript ID | pfu_aug2.0_83.1_10234.t2 |
| Definition | - |
>pfu_aug2.0_83.1_10234.t2 atgcaaggcattttggctgaggccaagaaaaacagatattccttaataaaggacacgttatctgaagacgatgtggccaa tgtctgggaaagtgtttccaacttcattgaaaaacaaatgtcacaggggaagggagtgggtattccatcactgggaactt tcaccttcactcaaaagaagcttgatatcggaaataataaattcatcatgatgcagaggccattgtttgtgttgtcagaa aaatttgctcaaactcacggattacagtacacaaaatatcatgtcccaggaacaataccagtggtacagttgaattttgc cgccatggcttttgagagtccattcgatcgtgacacagtagaaagttgtgtgaaggaaatcttaagtgcagtgtctcgtg ctgtcggagcaaagaaaaatgtagaattaacatttaacggcataggaagattaacaattagggattcacgtgtaaaaatg aggttctacaaggaatatattaatcagatggatggatctggaaaactgctggattccatgcaaaattttgtcttcagaaa tagtttatatgccaatggtagatatgttattcataccaaaatatcaaacaccagccttgcccctgggggaggtggattag ctcccgtggtggaggagggagatatagacaaccagattcctgaccccctagctccagtcaaccaactacaggagatgcag cccatggatacgtacgataatgatataatggaacttccacccccggcccctgtggaggatatcgtacagaacgaaggaat ggtggggatggaggttggtgacctagcgacatcagaggccatacgtcacattgaggaccgaggggaggggctgcctaaca ccatcagtgagaaggctctacagaccatcaacgtacctataacaggcgaactggatatcaacccagatcaagatgtggac agttatgttacggtagatcccgatagaaatattttgcccccgataggtgaacacctgaagaagcctcccagtgtggtacc tagtcgatcaggttctagaatggctatgcccctcgccaaggctaatggagtgagtctgttagacgaccttgtaccttcag tcctgacacccaaatctgccccatctcctggtctagggacactgcataaatctgcaccctcaccattcaataatgtcaca gaaggtgcccaacccagaatgtcagggtctcccaagctggccccattacagaggtcacatagtatgacagagatgcccga gaaagaggaaaagccagcagccccgcctaaatctgcctgcggtcaccccgttgcaggtcaggagctgtgctatttatgtc atcaacgagctcgacgtaatatccccgtgtcatttacggaggagaggaaacgcagagaggatgaggaagacaaattatta caacagttccagtacatgaaggatgctgaagacacgttagctcaacagaagcctcccagtgtggtacctagtcgatcagg ttctagaatggctatgcccctcgccaaggctaatggagtgagtctgttagacgaccttgtaccttcagtcctgaccccca aatctgccccatctcctggtctggggacactgcataaatctgcaccctcaccattcaataatgtcacagaaggtgcccaa cccagaatgtcagggtctcccaagctggccccattacagaggtcacatagtatgacagagatgcccgagaaagaggaaaa gccagcagccccgcctaaatctgcctgcggtcaccccgttgcaggtcaggagctgtgctatttatgtcatcaacgagctc gacgtaatatccccgtgtcatttacggaggagaggaaacgcagagaggatgaggaagacaaattattacaacagttccag tacatgaaggatgctgaagacacgttagctcaacaggagagagatttatctaagcgtcatgaccttcagaaaatggctgc ctttaacttgggtgtggcagaggcggtaactacaaagaagaaatccagagacacagaattccataaatcatacatattcc aaaggcgacctttaacaccaaacaggatatacaaacagcaggaatactctggtgatcttgccgtacaagtgaatgccaaa gaggaggtgaagaagaagcgcaaatctgatgaagatttcctggagcgattagagcaagtacagctggcagaggatttggc agcccagcgagaacagtaccttaaggacaagcaagatcagcaggatatgtacaaacaggcattagaagctcagctgcgat tcaaacctctacaagtccctcccagggagccagataacgaggtgtttggaaagaacgatatgaccaatgagaaaatggct gctcgaaggagccaggcttttgatcttttccgagaacagcaggacttggtagcccagaaaaaacgggaggccatcttgaa acgcttaacagagcaaaaagaagaggaggatgtactagatagaaccaaaaaggagctgcttgatgacagagccggtagat ataaccgtcgtatgaatatgcgtaaacgcctcgagaacgactggatgtctgcggcacagcttaaacgtcaacgtgacatg gaggagcgcctccacctcctccagcctgccctcctcctacatgagcagtgtgataaatacaacaggtgcagccaatgtaa acggaagctcaataattgtggggagtccaatatctggagcgagtccagatacattccaggatccagacttatggtgtaa |
|
Protein
| Protein ID | pfu_aug2.0_83.1_10234.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10234.t1 MQGILAEAKKNRYSLIKDTLSEDDVANVWESVSNFIEKQMSQGKGVGIPSLGTFTFTQKKLDIGNNKFIMMQRPLFVLSE KFAQTHGLQYTKYHVPGTIPVVQLNFAAMAFESPFDRDTVESCVKEILSAVSRAVGAKKNVELTFNGIGRLTIRDSRVKM RFYKEYINQMDGSGKLLDSMQNFVFRNSLYANGRYVIHTKISNTSLAPGGGGLAPVVEEGDIDNQIPDPLAPVNQLQEMQ PMDTYDNDIMELPPPAPVEDIVQNEGMVGMEVGDLATSEAIRHIEDRGEGLPNTISEKALQTINVPITGELDINPDQDVD SYVTVDPDRNILPPIGEHLKKPPSVVPSRSGSRMAMPLAKANGVSLLDDLVPSVLTPKSAPSPGLGTLHKSAPSPFNNVT EGAQPRMSGSPKLAPLQRSHSMTEMPEKEEKPAAPPKSACGHPVAGQELCYLCHQRARRNIPVSFTEERKRREDEEDKLL QQFQYMKDAEDTLAQQKPPSVVPSRSGSRMAMPLAKANGVSLLDDLVPSVLTPKSAPSPGLGTLHKSAPSPFNNVTEGAQ PRMSGSPKLAPLQRSHSMTEMPEKEEKPAAPPKSACGHPVAGQELCYLCHQRARRNIPVSFTEERKRREDEEDKLLQQFQ YMKDAEDTLAQQERDLSKRHDLQKMAAFNLGVAEAVTTKKKSRDTEFHKSYIFQRRPLTPNRIYKQQEYSGDLAVQVNAK EEVKKKRKSDEDFLERLEQVQLAEDLAAQREQYLKDKQDQQDMYKQALEAQIHIRDKFRKPDGLLRTPSPPSLFHSQQFV AAKPKLSTSRLSFNSFSLPMIPNVIRPFGESSRDRLNEDLRRYSATRLRFKPLQVPPREPDNEVFGKNDMTNEKMAARRS QAFDLFREQQDLVAQKKREAILKRLTEQKEEEDVLDRTKKELLDDRAGRYNRRMNMRKRLENDWMSAAQLKRQRDMEERL HLLQPALLLHEQCDKYNRCSQCKRKLNNCGESNIWSESRYIPGSRLMV |
|
| Protein ID | pfu_aug2.0_83.1_10234.t2 |
| Definition | - |
>pfu_aug2.0_83.1_10234.t2 MQGILAEAKKNRYSLIKDTLSEDDVANVWESVSNFIEKQMSQGKGVGIPSLGTFTFTQKKLDIGNNKFIMMQRPLFVLSE KFAQTHGLQYTKYHVPGTIPVVQLNFAAMAFESPFDRDTVESCVKEILSAVSRAVGAKKNVELTFNGIGRLTIRDSRVKM RFYKEYINQMDGSGKLLDSMQNFVFRNSLYANGRYVIHTKISNTSLAPGGGGLAPVVEEGDIDNQIPDPLAPVNQLQEMQ PMDTYDNDIMELPPPAPVEDIVQNEGMVGMEVGDLATSEAIRHIEDRGEGLPNTISEKALQTINVPITGELDINPDQDVD SYVTVDPDRNILPPIGEHLKKPPSVVPSRSGSRMAMPLAKANGVSLLDDLVPSVLTPKSAPSPGLGTLHKSAPSPFNNVT EGAQPRMSGSPKLAPLQRSHSMTEMPEKEEKPAAPPKSACGHPVAGQELCYLCHQRARRNIPVSFTEERKRREDEEDKLL QQFQYMKDAEDTLAQQKPPSVVPSRSGSRMAMPLAKANGVSLLDDLVPSVLTPKSAPSPGLGTLHKSAPSPFNNVTEGAQ PRMSGSPKLAPLQRSHSMTEMPEKEEKPAAPPKSACGHPVAGQELCYLCHQRARRNIPVSFTEERKRREDEEDKLLQQFQ YMKDAEDTLAQQERDLSKRHDLQKMAAFNLGVAEAVTTKKKSRDTEFHKSYIFQRRPLTPNRIYKQQEYSGDLAVQVNAK EEVKKKRKSDEDFLERLEQVQLAEDLAAQREQYLKDKQDQQDMYKQALEAQLRFKPLQVPPREPDNEVFGKNDMTNEKMA ARRSQAFDLFREQQDLVAQKKREAILKRLTEQKEEEDVLDRTKKELLDDRAGRYNRRMNMRKRLENDWMSAAQLKRQRDM EERLHLLQPALLLHEQCDKYNRCSQCKRKLNNCGESNIWSESRYIPGSRLMV |
|