Gene
| Gene Model ID | pfu_aug2.0_83.1_10239 |
|---|---|
| Locus | scaffold83.1 : 154294 ... 159145 : - |
| To GenomeBrowser | scaffold83.1:154294..159145 |
| Genes list of scaffold | scaffold83.1 |
| Synonym | pfu_aug1.0_73391.1_20469 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| achaete-scute homolog partial | GO:0003677 GO:0046983 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_83.1_10239.t1 | 2 | 1 | HLH | 3 | 52 | 4.0e-17 | 61.6 | 4.6e-21 | 6.8e-17 | 60.9 |
| pfu_aug2.0_83.1_10239.t1 | 2 | 2 | HLH | 106 | 115 | 4.0e-17 | 61.6 | 0.27 | 4000.0 | -2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_83.1_10239.t1 | gi|694846241|ref|XP_009464139.1| | PREDICTED: achaete-scute homolog 1, partial [Nipponia nippon] | 1.0e-13 |
| pfu_aug2.0_83.1_10239.t1 | gi|699698330|ref|XP_009906660.1| | PREDICTED: achaete-scute homolog 1, partial [Picoides pubescens] | 1.0e-13 |
| pfu_aug2.0_83.1_10239.t1 | gi|632973202|ref|XP_007903037.1| | PREDICTED: achaete-scute homolog 1-like [Callorhinchus milii] | 2.0e-13 |
| pfu_aug2.0_83.1_10239.t1 | gi|683941712|ref|XP_009099060.1| | PREDICTED: achaete-scute homolog 1, partial [Serinus canaria] | 2.0e-13 |
| pfu_aug2.0_83.1_10239.t1 | gi|548467063|ref|XP_005680696.1| | PREDICTED: achaete-scute homolog 1 [Capra hircus] | 2.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_83.1_10239.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10239.t1 atgtcgcgccggaatgcgcgcgagagaaggcgcgttaaattgataaatttgggatatgagactttgaggcatcatgttcc tgcaggtattgagaacaaaaaactaagtaaagtagagacattacggtctgctgttaattacatcaaatacctccagagtc tgctagaatctaatgacccgtttaagttagacagtcctgcaagttcgcagcaaagtcaggaaagcgacaatcaaaatgga actgggctcgttgaacgaactttgtctagtgattccagtgttgaggaacagtctccagtgattgtaaaggaagaaagact ggacaatcatattccttgttcacaatctgacagtgtcagggaaaccagcacagcggcggaaccagcggccaaagaagacc atgtatttatagatattgccaaatggctttgccaaaactctgacagcattaaacacagcaattttaaatttaaaggtatt ttggatgatgtctcagatgacatgcagcctccgttctag |
|
Protein
| Protein ID | pfu_aug2.0_83.1_10239.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10239.t1 MSRRNARERRRVKLINLGYETLRHHVPAGIENKKLSKVETLRSAVNYIKYLQSLLESNDPFKLDSPASSQQSQESDNQNG TGLVERTLSSDSSVEEQSPVIVKEERLDNHIPCSQSDSVRETSTAAEPAAKEDHVFIDIAKWLCQNSDSIKHSNFKFKGI LDDVSDDMQPPF |
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