Gene
| Gene Model ID | pfu_aug2.0_83.1_10240 |
|---|---|
| Locus | scaffold83.1 : 213417 ... 215650 : - |
| To GenomeBrowser | scaffold83.1:213417..215650 |
| Genes list of scaffold | scaffold83.1 |
| Synonym | pfu_aug1.0_5392.1_45194 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| achaete-scute homolog 1b-like | GO:0005488 GO:0030182 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_83.1_10240.t1 | 1 | 1 | HLH | 85 | 134 | 3.3e-18 | 65.1 | 1.7e-21 | 6.2e-18 | 64.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_83.1_10240.t1 | gi|736297740|ref|XP_010792025.1| | PREDICTED: achaete-scute homolog 1b-like [Notothenia coriiceps] | 3.0e-30 |
| pfu_aug2.0_83.1_10240.t1 | gi|573909806|ref|XP_006642621.1| | PREDICTED: LOW QUALITY PROTEIN: achaete-scute homolog 1b-like [Lepisosteus oculatus] | 7.0e-30 |
| pfu_aug2.0_83.1_10240.t1 | gi|512829711|ref|XP_002944648.2| | PREDICTED: achaete-scute homolog 1 [Xenopus (Silurana) tropicalis] | 2.0e-29 |
| pfu_aug2.0_83.1_10240.t1 | gi|734607636|ref|XP_010731024.1| | PREDICTED: achaete-scute homolog 1b-like [Larimichthys crocea] | 3.0e-29 |
| pfu_aug2.0_83.1_10240.t1 | gi|45383333|ref|NP_989743.1| | achaete-scute complex homolog 1 [Gallus gallus] | 4.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_83.1_10240.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10240.t1 atgactaccacgttgagcctgctacccctccatgccttagcttcctccaatggtggcaccgtgcagatgacatcagggcc ctacatcctggtacgtgcaaccacagtggcacaggatttacaaaacaaacgcattcttaagaaacaggaaaacgtctcgc caaaggaaccagaggcgctgagatgcaaacggcgaacagattcaacaggtttacacaacatcttaccaagaccgcaacct gcagcagtggcaagaagaaacgagcgggaaaggaatcgagtgaaaatggtgaatctgggttttgaaacactaagagaaca tgttccaagtggaaagaagaataagaaaatgagtaaagttgacactttgagagcagcagtggattacattaaacaattac aagacattttaagaaatgaatcagagaatatggacatcacaagtccggtgtcttcggaatcgggtttctccacaattgac tataattcactgtctgatatcagatcttcaacctctacagagcagcactcacccgcaccaagtctgtcatcggacgctct atcagagtctttcagttcagaggaggatgaccttccagacctaggatcatggttctcctga |
|
Protein
| Protein ID | pfu_aug2.0_83.1_10240.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10240.t1 MTTTLSLLPLHALASSNGGTVQMTSGPYILVRATTVAQDLQNKRILKKQENVSPKEPEALRCKRRTDSTGLHNILPRPQP AAVARRNERERNRVKMVNLGFETLREHVPSGKKNKKMSKVDTLRAAVDYIKQLQDILRNESENMDITSPVSSESGFSTID YNSLSDIRSSTSTEQHSPAPSLSSDALSESFSSEEDDLPDLGSWFS |
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