Gene
| Gene Model ID | pfu_aug2.0_83.1_10245 |
|---|---|
| Locus | scaffold83.1 : 312731 ... 337211 : + |
| To GenomeBrowser | scaffold83.1:312731..337211 |
| Genes list of scaffold | scaffold83.1 |
| Synonym | pfu_aug1.0_21343.1_33177 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rho gtpase-activating protein 1 | GO:0005622 GO:0007165 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_83.1_10245.t1 | 1 | 1 | CRAL_TRIO | 130 | 268 | 3.6e-09 | 36.2 | 1.5e-12 | 7.6e-09 | 35.2 |
| pfu_aug2.0_83.1_10245.t1 | 2 | 1 | CRAL_TRIO_2 | 138 | 279 | 4.1e-38 | 130.6 | 8.29989e-42 | 4.1e-38 | 130.6 |
| pfu_aug2.0_83.1_10245.t1 | 1 | 1 | RhoGAP | 321 | 467 | 3.92364e-44 | 149.9 | 0.0 | 6.86636e-44 | 149.1 |
| pfu_aug2.0_83.1_10245.t1 | 2 | 2 | CRAL_TRIO_2 | 419 | 419 | 4.1e-38 | 130.6 | 0.94 | 4600.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_83.1_10245.t1 | gi|676487689|ref|XP_009064378.1| | hypothetical protein LOTGIDRAFT_168254 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_83.1_10245.t1 | gi|524866441|ref|XP_005090042.1| | PREDICTED: rho GTPase-activating protein 8-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_83.1_10245.t1 | gi|524866445|ref|XP_005090044.1| | PREDICTED: rho GTPase-activating protein 8-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_83.1_10245.t1 | gi|524866443|ref|XP_005090043.1| | PREDICTED: rho GTPase-activating protein 8-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_83.1_10245.t1 | gi|524866447|ref|XP_005090045.1| | PREDICTED: rho GTPase-activating protein 8-like isoform X4 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_83.1_10245.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10245.t1 atgtcgtccacaaagagaagcaacagtgtggaggaaaatgcagccaagaatgatggagaggatggtttgtttgataacac agatccagagtttgaatttgatgagagtgggctggaactcgctgccaaggaagctgagcttgacattgaagctgaattag aaggggaggatggaccaacggataattatcccagtctctgggaacaaggtcaacctgtgttgccaatggtaactgactgg ccactcgatttagctcgggaggggccggaaggaaacgccccctttagaagtggtgccatcacccctgatggactgataga cgaggactttgaaaaagagctggggactccatctgacggagaggaagagccaccaggagaattccaggacatggctcagc ataaaatatttgaagtggctggtgatgatatgtatgggaggaaggtgattgtattttctgctagtaagctgccacccagt tcacagattgaccactggagactcctacagtatatgcggcacacattagaccagtatgtggagaatgattatgtagtggt gtactttcattatggattgaccagtaaaaataaacccaagctgtcatggctggtgcagatgtaccgagatctggacagaa agtataagaaaaatttaaaggccatgtatctagtacaccctaccaactttatcaagatattatggggaatcttcaaacct tttataagtgtgaagtttggtagaaagatcatgtatgttaactatctacaagagctgaaatcgcatctacatttcgatca acttgtcgtgcccaaaatggttctcgagcatgatgcaagactggttaaatccaacaagccgtcatacccatatagtaaga acgagacagatggtcccctcccttcacagcagtatggtgtcaccttacaatacatcaagcaacactatgggtgtgtaata cctccagttgtagaacagacggtagattatatcagaaaaaacgcccttgaagttgaaggaattttcagaagatcagcaaa tgcatccattttgaaaaaagtcaaagagaaatttaacaaaggagaaaaagtggatttttcagtggagggggatgtacata tagcagctgtagctttgaaaactttcctgcgtgacttacaagaacctttacttacatatgaggtttaccaacctgtagta cgacttcacaaccttgaggaggacaggaggcttttagaggtccatcgtattctcactgaggaattacctgaggacaacta cgcaatcctcaaatacatcatacagctacttactgaggttgtagataattctgaacagaacaaaatgacgtcaaccaatt tagccattgtatttggaccaaacttaatatggccgaagggtcaagcttccctgtccagtatgggctacctgaacaccttc gctaagtaccttatagacagctatgaccagttgtttgatagatga |
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Protein
| Protein ID | pfu_aug2.0_83.1_10245.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10245.t1 MSSTKRSNSVEENAAKNDGEDGLFDNTDPEFEFDESGLELAAKEAELDIEAELEGEDGPTDNYPSLWEQGQPVLPMVTDW PLDLAREGPEGNAPFRSGAITPDGLIDEDFEKELGTPSDGEEEPPGEFQDMAQHKIFEVAGDDMYGRKVIVFSASKLPPS SQIDHWRLLQYMRHTLDQYVENDYVVVYFHYGLTSKNKPKLSWLVQMYRDLDRKYKKNLKAMYLVHPTNFIKILWGIFKP FISVKFGRKIMYVNYLQELKSHLHFDQLVVPKMVLEHDARLVKSNKPSYPYSKNETDGPLPSQQYGVTLQYIKQHYGCVI PPVVEQTVDYIRKNALEVEGIFRRSANASILKKVKEKFNKGEKVDFSVEGDVHIAAVALKTFLRDLQEPLLTYEVYQPVV RLHNLEEDRRLLEVHRILTEELPEDNYAILKYIIQLLTEVVDNSEQNKMTSTNLAIVFGPNLIWPKGQASLSSMGYLNTF AKYLIDSYDQLFDR |
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