Gene
| Gene Model ID | pfu_aug2.0_83.1_10246 |
|---|---|
| Locus | scaffold83.1 : 345981 ... 355019 : + |
| To GenomeBrowser | scaffold83.1:345981..355019 |
| Genes list of scaffold | scaffold83.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_83.1_10246.t1 | 2 | 1 | Fibrinogen_C | 76 | 148 | 5.5e-31 | 107.9 | 7.0e-19 | 1.7e-15 | 57.2 |
| pfu_aug2.0_83.1_10246.t1 | 2 | 2 | Fibrinogen_C | 155 | 223 | 5.5e-31 | 107.9 | 1.7e-18 | 4.2e-15 | 55.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_83.1_10246.t1 | gi|700393366|ref|XP_009937154.1| | PREDICTED: fibrinogen-like protein A [Opisthocomus hoazin] | 3.0e-13 |
| pfu_aug2.0_83.1_10246.t1 | gi|340382702|ref|XP_003389857.1| | PREDICTED: microfibril-associated glycoprotein 4-like [Amphimedon queenslandica] | 5.0e-13 |
| pfu_aug2.0_83.1_10246.t1 | gi|697845747|ref|XP_009643240.1| | PREDICTED: angiopoietin-related protein 1-like [Egretta garzetta] | 8.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_83.1_10246.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10246.t1 atgattttagcgagcgtttgctgtaatggagttgatggtattttcaaaccaggcccattacatggaatcaaacatgcttt aagcaaaacaatccttgggatcaaatggaacaaggtgaagtggtctgctggaataaacggatccgcagacctgtctttga acgccaagattccactaacgtcggaaatagataacttaaggttgcaccacagagaaatcatgtgcaatagcattcaagga aaaagtggtgtgtatgaattttccgtaaacggaaaaagctacaaggtgctctgtgaaatggtcactaaagaagggggttg gacgttgtttcaaagacgtgaatcaaataaacaggtttttcatacaaaaacatgggctcaatataaagcgggatttggac aagcaggtcgaacagactattggctagataacttaaggttgcaccacagagaaatcatgtgcaatagcattcaaggaaaa agtggtgtgtatgaattttccgtaaacggaaaaagctacaaggtgctctgtgaaatggtcactaaagaagggggttggac gttgtttcaaagacgtgaatcaaataaacaggtttttcatacaaaaacatgggctcaatataaagcgggatttggacaag caggtcgaacagactattggctaggtaggtactatcatatgaaggcggaggccatgaatgattctccctaa |
|
Protein
| Protein ID | pfu_aug2.0_83.1_10246.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_83.1_10246.t1 MILASVCCNGVDGIFKPGPLHGIKHALSKTILGIKWNKVKWSAGINGSADLSLNAKIPLTSEIDNLRLHHREIMCNSIQG KSGVYEFSVNGKSYKVLCEMVTKEGGWTLFQRRESNKQVFHTKTWAQYKAGFGQAGRTDYWLDNLRLHHREIMCNSIQGK SGVYEFSVNGKSYKVLCEMVTKEGGWTLFQRRESNKQVFHTKTWAQYKAGFGQAGRTDYWLGRYYHMKAEAMNDSP |
|