Gene
| Gene Model ID | pfu_aug2.0_834.1_14592 |
|---|---|
| Locus | scaffold834.1 : 25256 ... 87879 : + |
| To GenomeBrowser | scaffold834.1:25256..87879 |
| Genes list of scaffold | scaffold834.1 |
| Synonym | pfu_aug1.0_12450.1_03238 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_834.1_14592.t1 | 3 | 1 | zf-C3HC4_4 | 187 | 219 | 1.9e-06 | 27.6 | 1.6e-09 | 1.9e-06 | 27.6 |
| pfu_aug2.0_834.1_14592.t1 | 3 | 1 | zf-B_box | 193 | 209 | 1.2e-10 | 41.1 | 0.066 | 75.0 | 3.3 |
| pfu_aug2.0_834.1_14592.t1 | 3 | 2 | zf-B_box | 281 | 326 | 1.2e-10 | 41.1 | 8.4e-06 | 0.0096 | 15.8 |
| pfu_aug2.0_834.1_14592.t1 | 3 | 2 | zf-C3HC4_4 | 298 | 316 | 1.9e-06 | 27.6 | 2.7 | 3100.0 | -1.9 |
| pfu_aug2.0_834.1_14592.t1 | 3 | 3 | zf-B_box | 338 | 375 | 1.2e-10 | 41.1 | 2.3e-13 | 2.6e-10 | 40.0 |
| pfu_aug2.0_834.1_14592.t1 | 3 | 3 | zf-C3HC4_4 | 358 | 365 | 1.9e-06 | 27.6 | 6.0 | 6800.0 | -3.0 |
| pfu_aug2.0_834.1_14592.t1 | 2 | 1 | TUDOR | 609 | 651 | 1.0e-17 | 64.1 | 2.2 | 2500.0 | -1.8 |
| pfu_aug2.0_834.1_14592.t1 | 2 | 2 | TUDOR | 820 | 917 | 1.0e-17 | 64.1 | 5.7e-20 | 6.5e-17 | 61.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_834.1_14592.t1 | gi|260834370|ref|XP_002612184.1| | hypothetical protein BRAFLDRAFT_88927 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_834.1_14592.t1 | gi|524890831|ref|XP_005101957.1| | PREDICTED: uncharacterized protein LOC101853010 [Aplysia californica] | 0.0 |
| pfu_aug2.0_834.1_14592.t1 | gi|390334324|ref|XP_003723900.1| | 2.00386e-43 | |
| pfu_aug2.0_834.1_14592.t1 | gi|585723606|ref|XP_006813672.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM36-like, partial [Saccoglossus kowalevskii] | 7.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_834.1_14592.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_834.1_14592.t1 atgtggctaaagtgcaaatttgcatacatctcagtagataacgaaataaatttcgtagatatctacttacaaacagaaaa gttaatgaatggaaaatatgaacaactcgagagacagctcaaaggcactactttacaggctgcgtttgatactctcaaca taaagcttgaaaaggttgattatatcagtaaacgttactgcaatttggactttgtggatgcgtacgaaaacgatcatgtt cgtgaaaatgaggacgatacccgcagtgagtaccacagtgaaaatcaggacgatacccagaatgagtatcataatgaacc acaggaagatacccagcccgggtactcgcgatcgtgtgatgacgactgcgaccttaacaataaaagcgaaaaagacacta tagacagtctatggaaaacgaatggaaaagaattaacttccggaacagttgaaataaagagggaaatatctacagatatg aatatgcagaaatctccaaattgcccgtcttgtcaatgtattttttccaccaaagatgtagggacaggatggcagcacaa aaacccgctgttactagcttgtggtcacacattctgtgctgggtgtctgacgaagatcgctcataaagagaaaacaagtc ttacatgtccttcatgcaaggtagcgacaacccttccaccagacggggaaggcagcgtcagaagtcttcatccagacgtt tatgttacagggtatattatgtgtacacagagaagtctactcaatcatgagctgggtaaactgaagccagctggaatgat gactcatcctcaatctataaaggcccctccagatgctagagataaaatatgcagggagtgtacaatgaagttagccatat gtaaatgtgatagatgtgatttcatcatgtgttcacagtgcttttataagattcactctacatctaatgccttgaagcag cataaggctatcccactagaatcactgaaaagtaatgatgaggtaacagcagagtgtcaagagcatcctaatcggctcct ggagtatttctgtgaggaggacaatcaggccatttgttctaaatgtgtgatagaaggtctacacaagtcacatgcaatag tatctatggaagaaaagaacaaagcattattgtcagagatagaacctgctttagtaatggccagcaaagttgtaaggaaa atcaaaggatcaaatcagactgtgaatggctttattcccgatgctaaacaagagacatttcctgttatacaggacataca tgaacattttcaacatttacacggagttcttcaagcaagggaacatcaacttgtagaggaggtgatatcattgttcagga agggaacagagccactccttaatctgaaatcttgtatgcaggaagagtcacagaaattagaaaaggcaataaaagcggca caacagattctgaacaataactgtgaggtagtactgaatgctaaagaggtgctggatcaactgacaaatgctaaaaatgt gccgtgtattatcaaagagaaagaggagcaggactcgcaagaaaaaatacgaaaattatccagaaataaactttggacaa gaaagcagtttgaatgtcaacgtgactgcactgcagttatgatgataataatattcacccctgatgattcttttgacggc aacttatcgacttacgggaaagtggagggtggagtacagataagggcagagtggcatacaccagaagaaatgcccgatga attcagggacgatgataatgaaagcatcggaaatatgacatcacaggacagtaacagtgtgatatcagtatcggaaacca tgtcatctgatgatgtcatcatagaaggggcctcaattcaagtcgatgttacaaagaaatcttgtatgcaggaagagtca cagaaattagaaaaggcaataaaagcggctcaacagattctgaacaataactgtgaggtagtactgaatgctaaagaggt gctggatcaactgacaaatgctaaaaatgtgccgtgtattatcaaagagaaagaggagcaggactcgcaagaaaaaaata cgaaaattatattcacccctgatgattcatttgacggcaacttatcgtcttacgggaaagtggagggtggagtacagata agggcagagtggcataccccggaagaaatgcccgacgaattcagggacgatgataatgaaagcatcggaaatatgacgtc acaggacagttacagtgtgatatcagtatcggaaaccatgtcatctgatgatgtcatcatagaagatgaacaagatttta ctgttggtggagtggaagttaggccgaagggttctaaaaataacaacaacatcagctcccgaccaaatggagcttacaaa gccaaatctaaacagaagaaagccgacacaaataaatataaatctggaactggagagcacatatacataacgcaccttaa gaacccgtgtagttttgcggttcatcgagccagtgacgtccctcaactaaagagtctcggaaggaaccttaataactggg gtaacagtcctatgtctgacagagaagtacctcagcagattaatccaggtgacctggttattgcacgatatacctccgac aattcatggtacagggctcgtgtgaagagagttaatgggattgacaaggaaaccatgacagtagacgtgttttacgttga ctacggaaactcagagtccatcactactgacagagattttgaccttgactttgacctttga |
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Protein
| Protein ID | pfu_aug2.0_834.1_14592.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_834.1_14592.t1 MWLKCKFAYISVDNEINFVDIYLQTEKLMNGKYEQLERQLKGTTLQAAFDTLNIKLEKVDYISKRYCNLDFVDAYENDHV RENEDDTRSEYHSENQDDTQNEYHNEPQEDTQPGYSRSCDDDCDLNNKSEKDTIDSLWKTNGKELTSGTVEIKREISTDM NMQKSPNCPSCQCIFSTKDVGTGWQHKNPLLLACGHTFCAGCLTKIAHKEKTSLTCPSCKVATTLPPDGEGSVRSLHPDV YVTGYIMCTQRSLLNHELGKLKPAGMMTHPQSIKAPPDARDKICRECTMKLAICKCDRCDFIMCSQCFYKIHSTSNALKQ HKAIPLESLKSNDEVTAECQEHPNRLLEYFCEEDNQAICSKCVIEGLHKSHAIVSMEEKNKALLSEIEPALVMASKVVRK IKGSNQTVNGFIPDAKQETFPVIQDIHEHFQHLHGVLQAREHQLVEEVISLFRKGTEPLLNLKSCMQEESQKLEKAIKAA QQILNNNCEVVLNAKEVLDQLTNAKNVPCIIKEKEEQDSQEKIRKLSRNKLWTRKQFECQRDCTAVMMIIIFTPDDSFDG NLSTYGKVEGGVQIRAEWHTPEEMPDEFRDDDNESIGNMTSQDSNSVISVSETMSSDDVIIEGASIQVDVTKKSCMQEES QKLEKAIKAAQQILNNNCEVVLNAKEVLDQLTNAKNVPCIIKEKEEQDSQEKNTKIIFTPDDSFDGNLSSYGKVEGGVQI RAEWHTPEEMPDEFRDDDNESIGNMTSQDSYSVISVSETMSSDDVIIEDEQDFTVGGVEVRPKGSKNNNNISSRPNGAYK AKSKQKKADTNKYKSGTGEHIYITHLKNPCSFAVHRASDVPQLKSLGRNLNNWGNSPMSDREVPQQINPGDLVIARYTSD NSWYRARVKRVNGIDKETMTVDVFYVDYGNSESITTDRDFDLDFDL |
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