Gene
| Gene Model ID | pfu_aug2.0_836.1_21196 |
|---|---|
| Locus | scaffold836.1 : 125329 ... 141815 : - |
| To GenomeBrowser | scaffold836.1:125329..141815 |
| Genes list of scaffold | scaffold836.1 |
| Synonym | pfu_aug1.0_726.1_22266 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_836.1_21196.t1 | 4 | 1 | zf-TRAF | 76 | 89 | 1.5e-22 | 79.7 | 1.7 | 1600.0 | -0.5 |
| pfu_aug2.0_836.1_21196.t1 | 4 | 2 | zf-TRAF | 87 | 134 | 1.5e-22 | 79.7 | 0.00044 | 0.4 | 11.0 |
| pfu_aug2.0_836.1_21196.t1 | 3 | 1 | Sina | 111 | 162 | 5.5e-07 | 29.4 | 9.1e-07 | 0.00084 | 19.0 |
| pfu_aug2.0_836.1_21196.t1 | 4 | 3 | zf-TRAF | 134 | 189 | 1.5e-22 | 79.7 | 6.6e-11 | 6.1e-08 | 32.9 |
| pfu_aug2.0_836.1_21196.t1 | 3 | 2 | Sina | 148 | 185 | 5.5e-07 | 29.4 | 0.027 | 25.0 | 4.4 |
| pfu_aug2.0_836.1_21196.t1 | 4 | 4 | zf-TRAF | 192 | 248 | 1.5e-22 | 79.7 | 2.5e-16 | 2.3e-13 | 50.2 |
| pfu_aug2.0_836.1_21196.t1 | 3 | 3 | Sina | 193 | 266 | 5.5e-07 | 29.4 | 9.1e-07 | 0.00085 | 19.0 |
| pfu_aug2.0_836.1_21196.t1 | 2 | 1 | MATH | 276 | 299 | 3.2e-27 | 95.1 | 9.0 | 8300.0 | -3.0 |
| pfu_aug2.0_836.1_21196.t1 | 2 | 2 | MATH | 428 | 566 | 3.2e-27 | 95.1 | 9.4e-30 | 8.7e-27 | 93.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_836.1_21196.t1 | gi|585682250|ref|XP_006812206.1| | PREDICTED: TNF receptor-associated factor 3-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_836.1_21196.t1 | gi|291223095|ref|XP_002731549.1| | PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_836.1_21196.t1 | gi|551510741|ref|XP_005806892.1| | PREDICTED: TNF receptor-associated factor 3-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_836.1_21196.t1 | gi|573888932|ref|XP_006632233.1| | PREDICTED: TNF receptor-associated factor 3-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_836.1_21196.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_836.1_21196.t1 atgtcctctgttgcggattctggaattggatcgatgcagaagtcgtcagtattatcgtcaatggaaagttccatgagatc acctagtgatatacatgtaccagagtttatagatctaccgaaaggatatgtatgtatcatatgtgcatcagtactcagga atgcaatgcagttgccctgcggtcatttattgtgcgagactccgtgtgttgacgtattgtttgacaacaaagaagaagct acatgtccgattagagaggaagactgccttgaaccatttaagaaaagagaggtgtttaaagatgtgtgtaccagaaaaga ggtcctattgcttaaagtgtattgtccttacagaaagcagggatgcaaagaaaaatttccatggagggttttaaataaac atgttgctgaatgtcagttccgactagtgccatgtccaaatgagggatgtaatgaacagatatcagcaaaccaactcgaa gagcatagacttaaaatgtgtctgtacagacctgttatttgtgaatattgtggacaaaccataccagaatgcgaactcaa gaagcattacttggatgtttgtgaaaaaataccaataccttgtccaaacaaatgtggcataggaaaattacccagaaatc agatgactgaacatgtaaaagtgtgtcccatggcacctagatcatgcgcatacaagagcattggctgcaaatttgagggc ttaaaaaaagaagtgagtgagcatgagcagaaagcgacagatattcatcttaagttggtgatccagttcacgcacgagac tagtgatcgaaatcagcgattagttcaagaaatggagaccattaaggaggagagagacaggttgaagaaagctattgatg atatgcatgaaacaaatagaaaaatgaaggaggaggttgatatgttcaacaaagattttacaaaggaattgaagaggaaa atggttgctttgactgaaagagtaataaagttggagagaagcatcggaaatcttcccaagagagaccttgttgaaagaca ggaaagagaattatcttcccttaaagaagagcaaacacaatttctagagagggtgaacagactagaacgggcggggccaa ttggaggagctgggagcgaggctccagcgtcaggtgaagttatggtcaaaacggcgcaaaacgagaggcagttagctata caagacgtgaaactcgcggaattagacctacgcttccaagttttggagaccgcaaactatgagggcgtcttaatgtggaa aatcagagattacaccagacgtaaacaagaggctgtagccgggaggaccgtgtccctgtatagccagccgttctatacca gcaggtacggatacaagatgtgtgccagggtctacctcaacggcgacggcatggggaaagggacacacctgtccctgttc tttgttgtcatgagaggcgagtacgacgcactcctacaatggccgttccagcacagggtcaccttgatgttgctggacca gcaagacggcagacgacatgtccatgactccttccagcccgacccaacgagctcgtcgttcgtccgacccacgtctgaaa tgaacatcgcgaccggatgtccgctgttcgtcgcgcatgccgtcatggagacggatacctacaagagagacgatacgatt ttcatcaaaatcaaagttacagaaaacaccgacaggacagtagttgtctctgataaattggccaatatgagataa |
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Protein
| Protein ID | pfu_aug2.0_836.1_21196.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_836.1_21196.t1 MSSVADSGIGSMQKSSVLSSMESSMRSPSDIHVPEFIDLPKGYVCIICASVLRNAMQLPCGHLLCETPCVDVLFDNKEEA TCPIREEDCLEPFKKREVFKDVCTRKEVLLLKVYCPYRKQGCKEKFPWRVLNKHVAECQFRLVPCPNEGCNEQISANQLE EHRLKMCLYRPVICEYCGQTIPECELKKHYLDVCEKIPIPCPNKCGIGKLPRNQMTEHVKVCPMAPRSCAYKSIGCKFEG LKKEVSEHEQKATDIHLKLVIQFTHETSDRNQRLVQEMETIKEERDRLKKAIDDMHETNRKMKEEVDMFNKDFTKELKRK MVALTERVIKLERSIGNLPKRDLVERQERELSSLKEEQTQFLERVNRLERAGPIGGAGSEAPASGEVMVKTAQNERQLAI QDVKLAELDLRFQVLETANYEGVLMWKIRDYTRRKQEAVAGRTVSLYSQPFYTSRYGYKMCARVYLNGDGMGKGTHLSLF FVVMRGEYDALLQWPFQHRVTLMLLDQQDGRRHVHDSFQPDPTSSSFVRPTSEMNIATGCPLFVAHAVMETDTYKRDDTI FIKIKVTENTDRTVVVSDKLANMR |
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