Gene
| Gene Model ID | pfu_aug2.0_837.1_24455 |
|---|---|
| Locus | scaffold837.1 : 171401 ... 200670 : - |
| To GenomeBrowser | scaffold837.1:171401..200670 |
| Genes list of scaffold | scaffold837.1 |
| Synonym | pfu_aug1.0_127.1_43487 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low-density lipoprotein receptor-related protein 2 | GO:0016020 GO:0043231 GO:0044444 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_837.1_24455.t1 | 5 | 1 | Ldl_recept_a | 26 | 70 | 2.4e-37 | 126.5 | 3.5e-10 | 5.2e-06 | 26.2 |
| pfu_aug2.0_837.1_24455.t1 | 5 | 2 | Ldl_recept_a | 290 | 323 | 2.4e-37 | 126.5 | 7.2e-05 | 1.1 | 9.2 |
| pfu_aug2.0_837.1_24455.t1 | 5 | 3 | Ldl_recept_a | 353 | 389 | 2.4e-37 | 126.5 | 4.4e-14 | 6.6e-10 | 38.7 |
| pfu_aug2.0_837.1_24455.t1 | 5 | 4 | Ldl_recept_a | 425 | 459 | 2.4e-37 | 126.5 | 1.1e-13 | 1.6e-09 | 37.4 |
| pfu_aug2.0_837.1_24455.t1 | 5 | 5 | Ldl_recept_a | 470 | 506 | 2.4e-37 | 126.5 | 4.0e-14 | 6.0e-10 | 38.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_837.1_24455.t1 | gi|662187522|ref|XP_008487317.1| | PREDICTED: low-density lipoprotein receptor-related protein 4 [Diaphorina citri] | 2.0e-20 |
| pfu_aug2.0_837.1_24455.t1 | gi|556983050|ref|XP_005997701.1| | PREDICTED: low-density lipoprotein receptor-related protein 2-like [Latimeria chalumnae] | 9.0e-20 |
| pfu_aug2.0_837.1_24455.t1 | gi|554525866|ref|XP_005857783.1| | PREDICTED: low-density lipoprotein receptor-related protein 2 [Myotis brandtii] | 2.0e-19 |
| pfu_aug2.0_837.1_24455.t1 | gi|558101604|ref|XP_006083327.1| | PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 2 [Myotis lucifugus] | 2.0e-19 |
| pfu_aug2.0_837.1_24455.t1 | gi|674058916|ref|XP_008836042.1| | PREDICTED: low-density lipoprotein receptor-related protein 2 [Nannospalax galili] | 4.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_837.1_24455.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_837.1_24455.t1 atgttcgactttactatgaactgggtgtggtgctgtttcttcctgcttcacggagcagattcagctttgagaggtaaatg ccatgaagacgagtttatgtgtaatactgcccttgggacatctgataacaatttggtggaatgtataccaactcagtatc actgtgactctttttatgattgtagcgactcttcagacgagttatattgctcatatataggagtttttgcagtgggaggt ataaggatgatactgtctttatattgccttacaagacacgacatttatggacaaaattatgaagattatgaactaagatc aatcacagagaaaggacagatttgcacaaattcatcttgccaagcacatccaggatatggcattttctgcagcgttatgg aagaagagcaatactgccatgtacccttctgtggttttggatctttagactatcgattaacatgcgacttcacaatatcg acatgtggatggaatgtccgatcaagagccacattcaggaaatggatttcagaacaagaaggactgatgatcaaggtaca tgtaaaagagaatgaaagaaacaagatcataatcaccagtccggtcaatgcatatgacagctttggctatataattgaat tttccatacggaccactaaaaatgttatatggagtctttcggagtgggacagaatgtttggtatttacgaatggtccaac agaaactgcacaaattgtcatatcgatataagagtctactataggataacactagtgttgtgggtgtatggattcagcga agacgagatcctcctatctatatcaaacagttatccacatctgagtgaagggcgtcttctaagccagcccgactgcaaat ggaatgaatataaatgcttcgacaaatgtaaaccagcaagcgtattgtacgacggagtcgatgattgttacagcggactt gatgaagaaatcctttatgacagcagtcacaatctcattcgaaagtatatttcaaatcctggtgctccggatacccacac cttcaacaatggaggaagatgtgagacaaaccgggagtttctatgtggaaacggcaggtgcttacacggacactatgttt gtaacgggaacaatgactgtggggatggcacggacgagcgagtctgcggacaggcaggtcaccaaccagaagtacaccaa acagtaaatcacgaaccagtatatacccagcctgtaatactccaaccagcatataccccgcctgtagattattgtaagat gtatcagcaattcagatgtgataatggacgctgtatacaacataacactgtctgtaatggtatagatgattgcaaggacg gatcggacgaaacgtgtggaataatcatgaccacaaccgatgccccgtcatgcaatgcacaaaatgaattcacatgcatc aaccggaagtgtatcaatctccattattattgtaacggatatgacgactgcggagacaactcggacgaacttcgatgcag taagaaattactcaatgtaccattttgtatttacaaagcattggcagatctttga |
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Protein
| Protein ID | pfu_aug2.0_837.1_24455.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_837.1_24455.t1 MFDFTMNWVWCCFFLLHGADSALRGKCHEDEFMCNTALGTSDNNLVECIPTQYHCDSFYDCSDSSDELYCSYIGVFAVGG IRMILSLYCLTRHDIYGQNYEDYELRSITEKGQICTNSSCQAHPGYGIFCSVMEEEQYCHVPFCGFGSLDYRLTCDFTIS TCGWNVRSRATFRKWISEQEGLMIKVHVKENERNKIIITSPVNAYDSFGYIIEFSIRTTKNVIWSLSEWDRMFGIYEWSN RNCTNCHIDIRVYYRITLVLWVYGFSEDEILLSISNSYPHLSEGRLLSQPDCKWNEYKCFDKCKPASVLYDGVDDCYSGL DEEILYDSSHNLIRKYISNPGAPDTHTFNNGGRCETNREFLCGNGRCLHGHYVCNGNNDCGDGTDERVCGQAGHQPEVHQ TVNHEPVYTQPVILQPAYTPPVDYCKMYQQFRCDNGRCIQHNTVCNGIDDCKDGSDETCGIIMTTTDAPSCNAQNEFTCI NRKCINLHYYCNGYDDCGDNSDELRCSKKLLNVPFCIYKALADL |
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