Gene
| Gene Model ID | pfu_aug2.0_841.1_04623 |
|---|---|
| Locus | scaffold841.1 : 264309 ... 279424 : + |
| To GenomeBrowser | scaffold841.1:264309..279424 |
| Genes list of scaffold | scaffold841.1 |
| Synonym | pfu_aug1.0_7575.1_02465 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| interferon-induced helicase c domain-containing protein 1 | GO:0005488 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_841.1_04623.t1 | 3 | 1 | ResIII | 44 | 112 | 3.8e-07 | 30.1 | 8.4e-10 | 1.6e-06 | 28.1 |
| pfu_aug2.0_841.1_04623.t1 | 2 | 1 | DEAD | 48 | 138 | 1.6e-07 | 31.0 | 1.0e-09 | 1.8e-06 | 27.5 |
| pfu_aug2.0_841.1_04623.t1 | 3 | 2 | ResIII | 156 | 191 | 3.8e-07 | 30.1 | 2.3 | 4300.0 | -2.7 |
| pfu_aug2.0_841.1_04623.t1 | 2 | 2 | DEAD | 214 | 361 | 1.6e-07 | 31.0 | 0.16 | 300.0 | 0.7 |
| pfu_aug2.0_841.1_04623.t1 | 3 | 3 | ResIII | 309 | 360 | 3.8e-07 | 30.1 | 0.52 | 960.0 | -0.6 |
| pfu_aug2.0_841.1_04623.t1 | 1 | 1 | Helicase_C | 332 | 415 | 3.5e-15 | 55.6 | 4.1e-18 | 7.7e-15 | 54.5 |
| pfu_aug2.0_841.1_04623.t1 | 1 | 1 | RIG-I_C-RD | 489 | 602 | 5.2e-17 | 61.8 | 6.0e-20 | 1.1e-16 | 60.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_841.1_04623.t1 | gi|524892613|ref|XP_005102833.1| | PREDICTED: uncharacterized protein LOC101853474 [Aplysia californica] | 5.0e-40 |
| pfu_aug2.0_841.1_04623.t1 | gi|478508066|ref|XP_004428316.1| | PREDICTED: interferon-induced helicase C domain-containing protein 1 [Ceratotherium simum simum] | 3.0e-34 |
| pfu_aug2.0_841.1_04623.t1 | gi|698420489|ref|XP_009695387.1| | PREDICTED: interferon-induced helicase C domain-containing protein 1 [Cariama cristata] | 5.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_841.1_04623.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_841.1_04623.t1 atggacgacgaggtcaatcctcaaaagagtgacgacattgatgtaggattcgaaaaattattattgtcagatgaagaaaa tgaagataaagaggatgagagccaagatgaaaggaaagagcgaggattggagttgcgaaactaccagctagagcttgcag cctcagctgtaacaggtcaaaataccatcatacatgcagctactggagcaggaaagacaagagtggccttttacattatc aaaagacatttggacaagaacccaagcggtaaagttgctgtgcttgccgataagaattttcttgtgagacaacattattt ggcactcaaggctttccttccggatttagagatcgtgggtttaacagccactcttggtacaaacagggcaaacagcctcg agaaagccaaagatcacgtgctcaccatcatgtccaatctggactgtgcaaagctttctacggtcaaagaaaacatagaa gaatatgaccgctatcgtagcgattattccgaaacaaaagagactctacccgaaccagatgagaaggatcctttttacca atgtatcgatgctgcgatgacaaagacggagcgatttatgcgaacagttctaaacgatttagacgttagtgaccctgatg agaaaacattgaaagactccttgcagagtccaccttctgctnagaagatataccgtgaagtactgtacatcaagtgttac ttgaattatgaatacgccatgtctgtacttgagaggagactgaaaaaggacagacttggacaatactctgtgtctaatga atcaacagaggcggagtttgctgaatttgcaagagatttgatcacatccatgaagtctgaagcaaaaaacatacaaacac gaggacgaaggagcccaatagactttttgctggatcaactagagaagcaaaatgaagaaagaagattcatacttttcgtc aaaacaagggagtttgcagaaatgctgaatgactttctgatgcgaaaaggatacaagtgttctgcatttaccggagcaag cgccgcatccgacgagggaggaacaagtaggtctgaccaggaaaaaattgtgaatgaattcaaggatggcaaaattgaag gacttatagcaacaaacattctggaggaaggactagacattcctgattgtaaatgttccataagttatgattatgttgga aatgaaatttctacacgacaaagtacaggacgaatcagaagaaaaactggtaatcgcatagtacttgcgaatttgaagga ttccctgagagatgtagtcaatattcaacgtggacgtctaatggacgaagctgtaaaggatgttctagcaatggatgatg ccactctgatgtccataattgagagaaaacagagacagatatgcgaaagcgaaaggagatcacaggggaccgtatcaaag gttcctaaattggacaactgtagattcaaaatgacctgcaaatcgtgtggaaaatttgatgtcgactgcagcaaaataag aagcattgacggcgcccatcacgtacttgtcgaaaaggacatttggaaatacatgacggcacaacctttcccgaaaaacc ctcctcgtttccatgaagatatcatattgcagggtaagctattcggaaatggaaaaaatggttgtacacaccaatgggga acagtcttttcttacaaaggggtcaggctaccagctatttcacacaaactgttggcagtaaaagacacagacacaaaaag aacatggaagattggaaaatgggaggaggcacctttcagtatactacccattagtgaagatgatctcaatcttatggcga ccgcagaagaaaaataa |
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Protein
| Protein ID | pfu_aug2.0_841.1_04623.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_841.1_04623.t1 MDDEVNPQKSDDIDVGFEKLLLSDEENEDKEDESQDERKERGLELRNYQLELAASAVTGQNTIIHAATGAGKTRVAFYII KRHLDKNPSGKVAVLADKNFLVRQHYLALKAFLPDLEIVGLTATLGTNRANSLEKAKDHVLTIMSNLDCAKLSTVKENIE EYDRYRSDYSETKETLPEPDEKDPFYQCIDAAMTKTERFMRTVLNDLDVSDPDEKTLKDSLQSPPSAXKIYREVLYIKCY LNYEYAMSVLERRLKKDRLGQYSVSNESTEAEFAEFARDLITSMKSEAKNIQTRGRRSPIDFLLDQLEKQNEERRFILFV KTREFAEMLNDFLMRKGYKCSAFTGASAASDEGGTSRSDQEKIVNEFKDGKIEGLIATNILEEGLDIPDCKCSISYDYVG NEISTRQSTGRIRRKTGNRIVLANLKDSLRDVVNIQRGRLMDEAVKDVLAMDDATLMSIIERKQRQICESERRSQGTVSK VPKLDNCRFKMTCKSCGKFDVDCSKIRSIDGAHHVLVEKDIWKYMTAQPFPKNPPRFHEDIILQGKLFGNGKNGCTHQWG TVFSYKGVRLPAISHKLLAVKDTDTKRTWKIGKWEEAPFSILPISEDDLNLMATAEEK |
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