Gene
| Gene Model ID | pfu_aug2.0_841.1_04624 |
|---|---|
| Locus | scaffold841.1 : 285579 ... 322259 : + |
| To GenomeBrowser | scaffold841.1:285579..322259 |
| Genes list of scaffold | scaffold841.1 |
| Synonym | pfu_aug1.0_22794.1_04242 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx58 isoform x2 | GO:0050789 GO:0050896 GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_841.1_04624.t1 | 3 | 1 | ResIII | 102 | 135 | 1.0e-16 | 61.3 | 1.5 | 1900.0 | -1.5 |
| pfu_aug2.0_841.1_04624.t1 | 2 | 1 | DEAD | 264 | 428 | 3.3e-18 | 65.7 | 7.1e-21 | 8.8e-18 | 64.3 |
| pfu_aug2.0_841.1_04624.t1 | 3 | 2 | ResIII | 275 | 426 | 1.0e-16 | 61.3 | 8.3e-20 | 1.0e-16 | 61.3 |
| pfu_aug2.0_841.1_04624.t1 | 2 | 1 | RIG-I_C-RD | 388 | 415 | 2.6e-13 | 49.9 | 1.5 | 1800.0 | -1.3 |
| pfu_aug2.0_841.1_04624.t1 | 3 | 3 | ResIII | 457 | 493 | 1.0e-16 | 61.3 | 3.0 | 3700.0 | -2.5 |
| pfu_aug2.0_841.1_04624.t1 | 2 | 2 | DEAD | 496 | 576 | 3.3e-18 | 65.7 | 2.0 | 2400.0 | -2.2 |
| pfu_aug2.0_841.1_04624.t1 | 1 | 1 | Helicase_C | 693 | 773 | 2.5e-11 | 43.2 | 4.3e-14 | 5.3e-11 | 42.2 |
| pfu_aug2.0_841.1_04624.t1 | 2 | 2 | RIG-I_C-RD | 850 | 963 | 2.6e-13 | 49.9 | 2.8e-16 | 3.4e-13 | 49.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_841.1_04624.t1 | gi|260817577|ref|XP_002603662.1| | hypothetical protein BRAFLDRAFT_235564 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_841.1_04624.t1 | gi|260809268|ref|XP_002599428.1| | hypothetical protein BRAFLDRAFT_249510 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_841.1_04624.t1 | gi|312079013|ref|XP_003141990.1| | hypothetical protein LOAG_06406 [Loa loa] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_841.1_04624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_841.1_04624.t1 atgttaaaagcagggccatattgtgaactaattcaccaaggtgctaacgtaatgtgctacattgttaaagtgattgatct tgcaatttcctggttttgtgtgtcatttgattatgcagtccttacggagaggtttttggcagacttagcgaagagtatag gtgcagaatggcaattactcggtgttttacttggggttcctcaacctcagatcgatcatttaatatacgacggacatctg gatgtccaaactaaaatttacaaatgtctactaaaatggaaggaaatcaaaggtcgagcgacagagaaggaacttttaga agaccttagagaagcttttattgagagagataaacaagatttagctgacaaaattgacgaaaagttgaaagatctaggtg atatggtacggtattcaagaaaacgtaaacatcaattcgaagatgacagcaaagaaattggtgtaaaggacaaattagcg aaggatgtcgaaatcggtaaccataataacggcaaaattagtgaagaaaaattaatattatcaaatagagaaggtgacga caaagggaatgcatacaaaggtgatgaggtactatattcgagaatacctgaacaagatgtgagcaaagaagatgttgtag aggaccaactaatgaaggatgtcgatggcagtattcataataacgacaaaattgatgaaggaaaattagtattgccagat ggagagagttatgacaaaggggatgcaaacatagataaaatgggaaatcgaggattagaaatgaggaattaccagctaga gttgtcatcactggctgtgaaaggacaaaataccatcatccatgcggctaccgggaccggaaagacaatggtggcattct atataatcaagagacatttggagaaaaatccaagtggcaaagttgctgtacttgcagaacagaattttcttgtggaacaa cattttaaggcactaaaggacctcctgccagaattagagaaaaaatcaattcttttgagtggaaccaaagaaaatagtcc tgatttacaattgatgataaacgagaaatccatatttattttgacgcctgccttgattgaaaataccatcaaaaaattag gggatccatcatttatttgcaagtttaccctgatgtttttcgacgaatgtcatcacactaataaacaggacacttacaaa cgactgatgaatgagtacttgctgttaaaggaacagagaaagaagctaccccagatcgtgggtttgacagcaacgcttgg tacgaacagagcaaattcactggataaagctgtagatcacgtgatcacaattatggccaatctggattgtgcaaagcttt ccacggtcgaagaaaatatggaagaatataacaagtatcgcagtgattattccgaaatatcagaaacactaccagatcca gatgagaatgatccattttaccaatgtatcgatgatgggatggcgaagacggaacagttcatgcaaagagttctgaacga tttagacgttagtgatgctgatcagaaaaaactgaaggactctctacagagtacaccctcagctagcaggttcaaagccg agtacgaaacgtggatcagcactttaagttcaaaggcaacacctctccttgacaggcgaaagattgtagctcatatagtc caaatgggaactaaatatctaaagatatacagtaagatacttcatattcactgttactcggtcaacaaatacgccatatc tgtactcgagagagaacttgaaaaggacacattggacatgggtctagtgattcaacagagttggaactcgctagaattgc agggggaaaggatggaagacaatattattatatcaaattataaatcagtatttcttctttatcataacaatttcttagat atgattaagtcgatgaaatctgaagcggaaaacacaaaagcacagcatgaaggaagacctatacattatctgctggatca ccttaagaacaaaaatgcgaagggaggatttctaataattgtcagaacaagggactttgctggaatacttgaagaccttt tgcaacaaagaggatataaatgtgctgctgttaccggatcaagcgcatcaatggaagagggaggcacaactatgcctaac cagtgcaaatacatagatgaattcaatgaaggaaaaattgaaggactcataggaacaaatttgatcgaagaaggtctaaa catacgtcgtttggattcagttataaattatgactatgttggaaatgaaattgcgaccagacagagtagaggacgcataa gaaaagaaactggcattcatagtgtatttgcgagctcaaaagattctcttagacattgtgtaaatattcaacgaggacat ctaatggatgaagctgtaagagaggttttaggtatgaatgatgaaaatctattgccagaaattaagagaaaacagaaaga aatatgtgaaaatgaacggagatcaaaggcaaccattccaaacattcctaagttcgaaagctgtagatacaaaatggcat gcaagttatgtggaaaatttgaagttgactgcgacaaaatcagaagtatcgacgggaagcatcacgtacttattgataag aacatttggaaatgcatgaaggtacttcctccttcctcggaaaaacgtattgattccaatattataaagcaaggcaagat aatcggaaatggagatcagggttgtacacaccccttggggagtgtgttttgttataaaggggtaaggttgccaactctta ctcggacatcgctagtagtgaaggacacagaaacgacaaaaacatgggaactgaagaaatgggagtttgcaccttttgaa gttttacccattgaagaagacgatatcaatatcatgagatga |
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Protein
| Protein ID | pfu_aug2.0_841.1_04624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_841.1_04624.t1 MLKAGPYCELIHQGANVMCYIVKVIDLAISWFCVSFDYAVLTERFLADLAKSIGAEWQLLGVLLGVPQPQIDHLIYDGHL DVQTKIYKCLLKWKEIKGRATEKELLEDLREAFIERDKQDLADKIDEKLKDLGDMVRYSRKRKHQFEDDSKEIGVKDKLA KDVEIGNHNNGKISEEKLILSNREGDDKGNAYKGDEVLYSRIPEQDVSKEDVVEDQLMKDVDGSIHNNDKIDEGKLVLPD GESYDKGDANIDKMGNRGLEMRNYQLELSSLAVKGQNTIIHAATGTGKTMVAFYIIKRHLEKNPSGKVAVLAEQNFLVEQ HFKALKDLLPELEKKSILLSGTKENSPDLQLMINEKSIFILTPALIENTIKKLGDPSFICKFTLMFFDECHHTNKQDTYK RLMNEYLLLKEQRKKLPQIVGLTATLGTNRANSLDKAVDHVITIMANLDCAKLSTVEENMEEYNKYRSDYSEISETLPDP DENDPFYQCIDDGMAKTEQFMQRVLNDLDVSDADQKKLKDSLQSTPSASRFKAEYETWISTLSSKATPLLDRRKIVAHIV QMGTKYLKIYSKILHIHCYSVNKYAISVLERELEKDTLDMGLVIQQSWNSLELQGERMEDNIIISNYKSVFLLYHNNFLD MIKSMKSEAENTKAQHEGRPIHYLLDHLKNKNAKGGFLIIVRTRDFAGILEDLLQQRGYKCAAVTGSSASMEEGGTTMPN QCKYIDEFNEGKIEGLIGTNLIEEGLNIRRLDSVINYDYVGNEIATRQSRGRIRKETGIHSVFASSKDSLRHCVNIQRGH LMDEAVREVLGMNDENLLPEIKRKQKEICENERRSKATIPNIPKFESCRYKMACKLCGKFEVDCDKIRSIDGKHHVLIDK NIWKCMKVLPPSSEKRIDSNIIKQGKIIGNGDQGCTHPLGSVFCYKGVRLPTLTRTSLVVKDTETTKTWELKKWEFAPFE VLPIEEDDINIMR |
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