Gene
| Gene Model ID | pfu_aug2.0_842.1_07938 |
|---|---|
| Locus | scaffold842.1 : 1 ... 8541 : + |
| To GenomeBrowser | scaffold842.1:1..8541 |
| Genes list of scaffold | scaffold842.1 |
| Synonym | pfu_aug1.0_45500.1_27105 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_842.1_07938.t1 | 2 | 1 | NRDE-2 | 210 | 549 | 0.0 | 259.7 | 0.0 | 0.0 | 256.9 |
| pfu_aug2.0_842.1_07938.t1 | 3 | 1 | FAT | 328 | 351 | 8.0e-06 | 25.0 | 1.6 | 3400.0 | -3.4 |
| pfu_aug2.0_842.1_07938.t1 | 3 | 2 | FAT | 388 | 422 | 8.0e-06 | 25.0 | 0.16 | 340.0 | -0.1 |
| pfu_aug2.0_842.1_07938.t1 | 3 | 3 | FAT | 626 | 700 | 8.0e-06 | 25.0 | 2.0e-08 | 4.3e-05 | 22.6 |
| pfu_aug2.0_842.1_07938.t1 | 2 | 2 | NRDE-2 | 637 | 669 | 0.0 | 259.7 | 0.0068 | 14.0 | 4.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_842.1_07938.t1 | gi|524901235|ref|XP_005107028.1| | PREDICTED: protein NRDE2 homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_842.1_07938.t1 | gi|733890245|ref|XP_010710118.1| | PREDICTED: protein NRDE2 homolog isoform X2 [Meleagris gallopavo] | 0.0 |
| pfu_aug2.0_842.1_07938.t1 | gi|675417252|ref|XP_008921926.1| | PREDICTED: protein NRDE2 homolog [Manacus vitellinus] | 0.0 |
| pfu_aug2.0_842.1_07938.t1 | gi|704504499|ref|XP_010078855.1| | PREDICTED: protein NRDE2 homolog, partial [Pterocles gutturalis] | 0.0 |
| pfu_aug2.0_842.1_07938.t1 | gi|694636910|ref|XP_009477137.1| | PREDICTED: protein NRDE2 homolog, partial [Pelecanus crispus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_842.1_07938.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07938.t1 atgactatcataaagaaaagaagaagaggaagaaagagaagcataagcacaaaaagaagaagtacaagtcagagaaagaa aggaatgttagtccatatagaggggatgacttaaatatcaaaaggaagaagacaatttatggtaataaagtatttataga tgaaatccgtgatttggaggcaaaggatgcttttcgtattgatagaaaatcgaatgcagagaattggaattaccagtctt tgtacaaaggtcatgtagcaaaatttcacgacacatatcgtacttgcattggtcagactgatggtgaacctttgtatgta agagagaagattgaaaaggacgtcaaaaaggagaagaagcggtactacagcaaagaaaatgccagagttgcaaatagagc accgattgagagattatgcacagacgatacaagtgccaaaaatggccaaactgttcttccagaaaaaatgctactcccta gtgagccaatcacgaaggaaagaattagagatgtggatgtgagagaaaaactgcttgacgctgatactaaattatatgtt gaaggcaagggaagcgttgaaggtgacattgatgaaggtgaaatttctgctgacgttttggcatcacatcgtaaaattga agaatataacagaaaactaagagaggatccacataatgttcctttgtggttagaatttgtgaagtatcaggacaagagaa gtgatcctgcagttagtgcgacaaaaggcaaagaggatgtaaaaatatcaaaattggccctgcatgaaaagaaggtggca attatgaagaaagcaatggaaagtaatcaaggaaatctggaactaaagatgaaataccttgaactttgtcaagagacttg ggaaccccatcaaattagtaaggaaattgaagacatgctatttgtacagccaactaatctgtcactatggcaacattatt tattatttcatcagagtcgtctatcatcattcagcgtcacaaggatgagtaagatgtatcagaaatgcctgaagacattg ttgaagtacagtaccggtaaagtacatactgctgtttccaccggagatgttccacaaaaaatgttagtgatactcggtca atacctaaacttcctcaaacagacaggacttacagagagagccatagctacattccaagccttggtggaatttaacctat tctgtccaatcaaatacaaggaggagtcactggaaaatagaaaagcattgtttgagagcttttgggatagtaatgtgccc agggtaggggaggaggtagctaaagggtggagcttctatgcagaaaacaagcatcctacaaaagctgaacagaaaaatat gtggtatgagtgcggtttgaacccagattttcagcatgctatcttaagcatgctagccgggggtgctaaccactacacta ccgggcagacatggctaaaaatagaacaactaaggagtttgaatcattggttgccatggagaccagacatttcaaaagat gaaactgaggaggattgtgaagatgtggatcgtttagtgttatttgatgatatttccccgtttcttatagatatcccaga atccctttgttttgatcttatttatgccttcttacaaactattggtgccggtgaagaaaggtctttgactagcgacctaa tgagccagtgttatgttgaagacctcagctcattatctcaaaatatgcaagttatgctttctttaaacaattttagtcga aattcttctgttgtggagtcatttgtaactgcagtttgccaacaaacgggaaaagtactgaacagtgaacataaaaccaa tcttgccttgttgatgttgaattacaaagctgacaaagttatacaatcagttaatcaaacttcagcagcaataaaatcta taaaatcattgtttaaatcagtactcaaagagccagaaaacagggaaaatgttgacatttggatgagatatgcacaacta ctgtggaaatgtggtcaaaatcaggaggcaataggcattttagagatggcaatatctcttctaggaccaaagaaagggca ggatgtgattcagatgtacagagtcttagttgaacttttacttggatttacagaggtggagagactatgttcaatgggta ggaaagaccaaagaaatgatgtgaacccttcaaaagctctgtctgttttgtcttgcttagtagaagggaaacatcagaat gtaaaaaagtatgagtctgtcagtcccatcgccattttgaaatgtggtaaaactttggagactttaaccaatgcatcatg gcttaaaattcaggaagaaattggagaagatggcaatttgtgcttgaggcgttacttagaatgtgtgaagtgtaaagcat tgtttgagtacattaatacttcatcaaagattgatacagcgacaagtgttttaaaccaagctcttgtagagatgtataaa tttgctgacagccacagtgtctcaataagtgaccttgacccttgcaatgcttctgataaagtgacagggacagtctccaa actcttatatgacatattcaaatataaagtgaggcttgttcaacatcatatgaacctcagcagttatcctctacaaaatt tacgcagtgtgatcgatgcagcgttggaactgttccctaatgactcttgctttcttcaagcattcttggactgcgagaaa ggttcccattttctgggaagagtggatcgttacttcagtagaagtctaagcagagttacttcccttgttcctgtagtgta tgctgtgatgtcacagttagaaagaatgatgggtaaatttaccatttcgaagatctgttag |
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Protein
| Protein ID | pfu_aug2.0_842.1_07938.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07938.t1 DYHKEKKKRKKEKHKHKKKKYKSEKERNVSPYRGDDLNIKRKKTIYGNKVFIDEIRDLEAKDAFRIDRKSNAENWNYQSL YKGHVAKFHDTYRTCIGQTDGEPLYVREKIEKDVKKEKKRYYSKENARVANRAPIERLCTDDTSAKNGQTVLPEKMLLPS EPITKERIRDVDVREKLLDADTKLYVEGKGSVEGDIDEGEISADVLASHRKIEEYNRKLREDPHNVPLWLEFVKYQDKRS DPAVSATKGKEDVKISKLALHEKKVAIMKKAMESNQGNLELKMKYLELCQETWEPHQISKEIEDMLFVQPTNLSLWQHYL LFHQSRLSSFSVTRMSKMYQKCLKTLLKYSTGKVHTAVSTGDVPQKMLVILGQYLNFLKQTGLTERAIATFQALVEFNLF CPIKYKEESLENRKALFESFWDSNVPRVGEEVAKGWSFYAENKHPTKAEQKNMWYECGLNPDFQHAILSMLAGGANHYTT GQTWLKIEQLRSLNHWLPWRPDISKDETEEDCEDVDRLVLFDDISPFLIDIPESLCFDLIYAFLQTIGAGEERSLTSDLM SQCYVEDLSSLSQNMQVMLSLNNFSRNSSVVESFVTAVCQQTGKVLNSEHKTNLALLMLNYKADKVIQSVNQTSAAIKSI KSLFKSVLKEPENRENVDIWMRYAQLLWKCGQNQEAIGILEMAISLLGPKKGQDVIQMYRVLVELLLGFTEVERLCSMGR KDQRNDVNPSKALSVLSCLVEGKHQNVKKYESVSPIAILKCGKTLETLTNASWLKIQEEIGEDGNLCLRRYLECVKCKAL FEYINTSSKIDTATSVLNQALVEMYKFADSHSVSISDLDPCNASDKVTGTVSKLLYDIFKYKVRLVQHHMNLSSYPLQNL RSVIDAALELFPNDSCFLQAFLDCEKGSHFLGRVDRYFSRSLSRVTSLVPVVYAVMSQLERMMGKFTISKIC |
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